Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1273 ATGGCGAACAACGAAGAAGAACACACACATGCATTGAAGGATAAGTTGAAGAAACTTGTTAATACTATTGTTGAAGGTGATGACTTCACTGTTCATGCTGCTGATGAAGCTATCACTGCTCTTTCTGTTCTAAGGGATATGAAATGCAGTGCTTCATTCTCTCGTAAATTGGATCATTTGTCTGTTCCTGTTCCTCCACAGTTTCGTTGCCCCATCTCAGGTCTCATTATGACTGATCCTGTTATCTTGGCCAATGGACAGACGTATGATCGACCGTTCATCCAGAGGTGGCTGGATGAAGTCCACAGAGTTTGCCCTCAGACTCAGCGTGTCCTCTCTCACTCGATTCTTTCTCCTAATTATTTGGTCCATAACATGATTTCAAGGTGGTGTAAGGAACATGGAATTGAGCTACCAATGCCTGTTGGGGACTTTGACAATGGAGAAGTAACCGAAGCGCACAAATACATTTTACGTTCTTTGCTTCACAAACTGTCCTCATCTGCATTGGATCAAAAAGAAGCCGCAAAAGAGCTTCGGCTGTTAGCGAAGAGAGTGCCGTCATTTCGAACACTCTTTGGTGACTCAGAAGTGATTCAGAAGTTACTCAGTCCATTATCACCTGGCGTGGCTTGTATTGATCCTGAACTCCACGAGGACTTGATCACAGCTGTTCTAAATCTCTCAATCGATGAAAACAACAAGAGAGCTTTTGCAGAGGATGAAAATCTTATCGCCTTTATTATCGATTCCTTGAAATCAGGAACCATACAAACAAGGAGCAATGCTGCTGCAGCTATTTTCTCAGTATCAGCTCTTGATATCAACAAACACATTATTGGAAAAACTGATGCGATTAAATATTTGGTTGATCTTTTAGAAAAGGGACATCCATCAACAATGAAAGATGCTGCTTCGGCTATATTCAATCTATGTCTTGCACATGAAAATAAAGCAAGGACGGTTCGAGAAGGCGCGGTTCAGGTTATTCTAAGCAAGATCATCATGGACCATGTTCTAGTTGATGAGTTTTTGGCCTTATTGGCACTTCTATCTAGCCATTCCAGGGCTGTTGCGGCATTGGGAAGTCATGGCGCTGTCCCTTTCTTTATGGATATTTTAAGGGATAGCAGCATTTCGGATCGCAGCAAGGAGAATTGTGTTGCAATCTTGTACATAATATTTTTCAATGATAAAACAAAGAGGAAGGAAATTAGAGATGATGAAATAGCCAACGGTACATTGTCTAAGCTTGCACAGTGTGGAACTTCAAGAGCTAAGAGGAAAGCTTGCGGTATTCTTGATAGGCTCAAGATAGCTCAATCCTCACAGCACACCACTTGA 1344 0.4189 MANNEEEHTHALKDKLKKLVNTIVEGDDFTVHAADEAITALSVLRDMKCSASFSRKLDHLSVPVPPQFRCPISGLIMTDPVILANGQTYDRPFIQRWLDEVHRVCPQTQRVLSHSILSPNYLVHNMISRWCKEHGIELPMPVGDFDNGEVTEAHKYILRSLLHKLSSSALDQKEAAKELRLLAKRVPSFRTLFGDSEVIQKLLSPLSPGVACIDPELHEDLITAVLNLSIDENNKRAFAEDENLIAFIIDSLKSGTIQTRSNAAAAIFSVSALDINKHIIGKTDAIKYLVDLLEKGHPSTMKDAASAIFNLCLAHENKARTVREGAVQVILSKIIMDHVLVDEFLALLALLSSHSRAVAALGSHGAVPFFMDILRDSSISDRSKENCVAILYIIFFNDKTKRKEIRDDEIANGTLSKLAQCGTSRAKRKACGILDRLKIAQSSQHTT* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1273 447 ProSiteProfiles U-box domain profile. 63 137 IPR003613 GO:0004842|GO:0016567
Mal1g1273 447 CDD RING-Ubox_PUB 68 109 IPR045210 -
Mal1g1273 447 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 284 326 IPR000225 GO:0005515
Mal1g1273 447 SUPERFAMILY RING/U-box 52 138 - -
Mal1g1273 447 Gene3D - 148 445 IPR011989 -
Mal1g1273 447 SMART Ubox_2 67 130 IPR003613 GO:0004842|GO:0016567
Mal1g1273 447 Pfam U-box domain 64 134 IPR003613 GO:0004842|GO:0016567
Mal1g1273 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 137 IPR013083 -
Mal1g1273 447 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 442 - -
Mal1g1273 447 SUPERFAMILY ARM repeat 161 437 IPR016024 -
Mal1g1273 447 PANTHER U BOX DOMAIN-CONTAINING 6 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1273 Mal-Chr1 16208408 16210498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1273 126 446 U-box Gene Family AT3G07360 50.760 2.07e-98 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1273 - - gmx:100806132 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1273 1 16208408 16210498 Mal1g1273 1 16208408 16210498 ECH