Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1237 ATGATTTTGTTGGAGAAGAACAATGATAGTAATTTTGACGATATTAGGAAAGAAAAGGAAGACAAAGCGGAGACATTATTGCTTGTTGCCTTTTGCATGAGGTCATTGATGGGGACCGAGCTAATGAGGATATGTGTTAAAGAAGACGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCGCACTGAAGAGGGTAGAAGAGAACAAGAAACACAATGATAAAAATCCGACCAGTTCCTCTACAAGTGCGTCTGAATCACAGTCAACTCAGGTCGGAAACGGTGTTCAATTAAGTGATACTCCAAAGGTTTCTAGATCCCTTCGACGAAGACCGTGGATTAACAATGGACAGTGCGAGAGCGGTTCAGAGGAAGACGCTGATTGTGAGCGGCATGATCAAAATTTCTCCTCGAGACCGTGTCTTCCTAAAGGAGTCATCAGAGGATGTCCAGATTGCCGTAATTGCCAAAAGGTCATTGCTAGATGGCGACCAGAAGATGCTCGCAGGCCACATATTGAGGATGCTCCTGTTTTCTACCCTACTGAAGAGGAATTTCAAGATACTTTGAAATATATATCAAGTATTCGCTCCAGAGCTGAACCATATGGAATTTGTCGTATTGTTCCCCCACGTTCATGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGTAATTCAGGGACAAAGAAGTCAAGGGTTCAAAATAATATGAAAAGGAAAAGGAGAAGATGCACAAGAATGGGAGTGGATAATGGCACTGGAACAGAACCTAATGCAGGATTTTGTGAAGTTGAAACATTTGGGTTTGAACCTGGCCCAGAATTTACCATGGAAACATTTAAGAGATATGCAGACGAGTTTAAGGTCGAATACTTCAGAAATGATAATTTATCTCATCCAAGTGCTAATACAACAATTTTAAATGGTACCTCGGAGCCTTCTGTGGAGAACATTGAGGGTGAATACTGGCGGATGGTTGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGAGTTTTGGGAGTGGTTTTCCTAGCAAGTCTAGTCAAGTTTCTGTTTCATATGAACAGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGTTACCTGGATCTCTGCTCTCTTATGAAACCAGTGATATATCTGGTGTTGTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCATTTTGCTGGCATGTGGAAGATCACCATTTATATTCATTGAATTATATGCATCTGGGTGCTCCAAAAATGTGGTATGGTGTCCCTGCAAAAGATGCATGCAAATTGGAAGAGGCCATGAGAAACCAGTTACCTGACCTTTTTGCAGAACAACCTGACTTGCTTCATAAGCTGGTCACGCAACTCTCTCCTTCTATTCTTAAGTCCAAAGGTGTGCCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTAACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGCTTCAACTGTGCTGAGGCTGTTAACGTAGCTCCTGTTGACTGGCTTCCACATGGACATATTGCTATAGAGCTGTACCGTGAGCAGGGGCGCAAGACTTCCGTATCTCATGATAAGCTATTGCTTGGCGCTGCCAGGGAAGCAGTACGAGCCCAGTGGGAGATTACTTTGCTGAAGAAAAACACTTCGGATAATCTAAAATGGAAAGATGTCTGTGGAAAAGATGGTCTTTTGGCAAAAGCATTCAAGGCACGTGTTGAGATGGAGCGAGTAAGAAGGGAATTTCTCTGCAGTTCTTCAAAGGCATTAAAAATGGAGAGTAGTTTTGATGCTACAAGTGAAAGGGAATGCAACATATGTTTTTTTGATTTACACCTATCTGCTGCTGCCTGTCACTGTACCACAAATAGATATGCTTGTTTGGATCATGCTAAGCAATTGTGTTCTTGCTCTTGGAGCTCCAAATTTTTCCTCTTCCGTTATGATATTAGTGAACTAAATATTCTTGTCGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAAATTAGACCTTGGGCTGGCACTAACTTCTTATGTCTCGGTAAATAAAAAAACAGTACGTCAGGAATTGAAATTGCATTCATCCGACTCGTCTCATTCTTCCAGGAGCAATGTGGATAATGAGGTGGATTTGCATCCATCAAATAAATTTATTGACAATTCTCAATTGGCAGATGTCCCAATAGCAGATCGAGCAAATTCTGCAACTAGCAAGGATCAGAACTATCTTAAACAGAAGAAACTGTCAACATTTAATACCTCCAAACCTACGAGTGAGATGGCTAATCGTAAGATCTTTGTCATCAAAGAAGAATCTATTATTTGCAGATCAAAGCCAAGTGCCCATGTTTGTGAATTAAATCAGGAGGATTCTTCATATGCTTTATCTCCGCCTTTAGCTCAACACGGAGATGAGAAAAGTTCACATTGCAGACCTAATGATGTTATACTTCTTAGTGATGATGAAGATGATGAAATGAAGATGTCAAGCTTGACCATCCCTGTAACCGATGCTTCTGTGAAGGGTGAGAAGGATGCTATTACTGTACCTCGTGAAGATTCAGGTTCAAATTCAACTCAGCCTTTGCATGTGAAACAAGAATGTCACGAACAGAGGGGACCAGTTCTACCTTCTACCCCAGTAGATCTTTCTTTTCATATAGGTCTTACTAGTGCAGAATCAGTTAGAAATATCCCAGCTTCTTCAAGAGCGGATGCCGGCGATAATAGTGTAGGAAGTTTGGAGGTTTGCCCTCCGAACCCACAACCTTCCGGCACTATTAAGGCTAAGAATGAGGATAATCATGAGAAGTTTGGTGGATGTTCCACTTCTAATGTTGCAGACAGTGCAAGAGCTGTCAATGGAAGCATCTCTTGCGGTCCAAACCATTACCGTCAGAAAGGTCCTCGTATTGCAAAAGTTGTACGGCGCATCAACTGCAATGTTGAGCCTTTGAAATTTGGAGTTGTGCTTTCTGGAAAGCCATGGTGCAGCAGTAAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTCGCTACATAAATATCTTAGATCCATGCAGTACATGTTACTATATTTCAGAAATTCTTGATGCTGGACGTGGTTCGCCTCTATTTATGGTTTCCTTGGAAAATAGTCCAAGTGAGGTCTTCATTCATATGTCAGCAACAAAATGCTGGGATATGGTAAGAGAGAGAGTGAATCTAGAGATAGCAAAACAATTTAAGCTGGGAAGAAAGGGCCTTCCTCCTTTATATCCTGCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGAAATAGTGCAGGCTATTGAGGCACTAGATCAAAGTCGAGTTTGTAATGAATACTGGGACTCCCGGCCATTCTCTCGGCCTCAAGGGCAGGTTTTACAAGCTGGCCAGACCTCTATAAATGGTGTAGGGGGAAGTGATCAAGGGGTTCCCATGAATCAGCACACACCTGTTGGAGCTGTTGCAGTACTAAAGAGCCTATTTAAAAAGGCGAATGCGGAAGAATTGAACTCATTGTACAACATTCTTACTGACAATAAGCCAGCGGCTGAACAGATCCCAATTGCAAAAATTCTCTATGAAGAAATTCACAAAACCCAACCACCCTAG 3762 0.4184 MILLEKNNDSNFDDIRKEKEDKAETLLLVAFCMRSLMGTELMRICVKEDDDFPSVPPGFESYTSFALKRVEENKKHNDKNPTSSSTSASESQSTQVGNGVQLSDTPKVSRSLRRRPWINNGQCESGSEEDADCERHDQNFSSRPCLPKGVIRGCPDCRNCQKVIARWRPEDARRPHIEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPRSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRNSGTKKSRVQNNMKRKRRRCTRMGVDNGTGTEPNAGFCEVETFGFEPGPEFTMETFKRYADEFKVEYFRNDNLSHPSANTTILNGTSEPSVENIEGEYWRMVESPTEEIEVLYGADLETGSFGSGFPSKSSQVSVSYEQYIKSGWNLNNFARLPGSLLSYETSDISGVVVPWLYIGMCFSSFCWHVEDHHLYSLNYMHLGAPKMWYGVPAKDACKLEEAMRNQLPDLFAEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYREQGRKTSVSHDKLLLGAAREAVRAQWEITLLKKNTSDNLKWKDVCGKDGLLAKAFKARVEMERVRREFLCSSSKALKMESSFDATSERECNICFFDLHLSAAACHCTTNRYACLDHAKQLCSCSWSSKFFLFRYDISELNILVEALEGKLSAVYRWAKLDLGLALTSYVSVNKKTVRQELKLHSSDSSHSSRSNVDNEVDLHPSNKFIDNSQLADVPIADRANSATSKDQNYLKQKKLSTFNTSKPTSEMANRKIFVIKEESIICRSKPSAHVCELNQEDSSYALSPPLAQHGDEKSSHCRPNDVILLSDDEDDEMKMSSLTIPVTDASVKGEKDAITVPREDSGSNSTQPLHVKQECHEQRGPVLPSTPVDLSFHIGLTSAESVRNIPASSRADAGDNSVGSLEVCPPNPQPSGTIKAKNEDNHEKFGGCSTSNVADSARAVNGSISCGPNHYRQKGPRIAKVVRRINCNVEPLKFGVVLSGKPWCSSKAIFPKGFRSRVRYINILDPCSTCYYISEILDAGRGSPLFMVSLENSPSEVFIHMSATKCWDMVRERVNLEIAKQFKLGRKGLPPLYPAGSLDGFEMFGFSSPEIVQAIEALDQSRVCNEYWDSRPFSRPQGQVLQAGQTSINGVGGSDQGVPMNQHTPVGAVAVLKSLFKKANAEELNSLYNILTDNKPAAEQIPIAKILYEEIHKTQPP* 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1237 1253 ProSiteProfiles JmjN domain profile. 180 221 IPR003349 -
Mal1g1237 1253 SMART JmjN_1 179 220 IPR003349 -
Mal1g1237 1253 Pfam JmjC domain, hydroxylase 420 536 IPR003347 -
Mal1g1237 1253 Gene3D - 1024 1161 - -
Mal1g1237 1253 PANTHER JUMONJI 14-RELATED 107 776 - -
Mal1g1237 1253 MobiDBLite consensus disorder prediction 892 916 - -
Mal1g1237 1253 Pfam jmjN domain 181 214 IPR003349 -
Mal1g1237 1253 SMART fyrc_3 1081 1175 IPR003889 GO:0005634
Mal1g1237 1253 SMART fyrn_3 1031 1075 IPR003888 GO:0005634
Mal1g1237 1253 SMART cupin_9 390 553 IPR003347 -
Mal1g1237 1253 Pfam C5HC2 zinc finger 643 693 IPR004198 -
Mal1g1237 1253 Pfam F/Y rich C-terminus 1080 1163 IPR003889 GO:0005634
Mal1g1237 1253 ProSiteProfiles FYR domain FYRC motif profile. 1077 1167 IPR003889 GO:0005634
Mal1g1237 1253 Pfam F/Y-rich N-terminus 1029 1072 IPR003888 GO:0005634
Mal1g1237 1253 MobiDBLite consensus disorder prediction 80 107 - -
Mal1g1237 1253 PANTHER LYSINE-SPECIFIC DEMETHYLASE 107 776 - -
Mal1g1237 1253 ProSiteProfiles FYR domain FYRN motif profile. 1017 1075 IPR003888 GO:0005634
Mal1g1237 1253 PANTHER JUMONJI 14-RELATED 837 1250 - -
Mal1g1237 1253 ProSiteProfiles JmjC domain profile. 390 553 IPR003347 -
Mal1g1237 1253 PANTHER LYSINE-SPECIFIC DEMETHYLASE 837 1250 - -
Mal1g1237 1253 SUPERFAMILY Clavaminate synthase-like 298 580 - -
Mal1g1237 1253 MobiDBLite consensus disorder prediction 73 111 - -
Mal1g1237 1253 Gene3D Cupin 165 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1237 Mal-Chr1 15620344 15629812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1237 37 1248 JUMONJI Transcription Factor Family AT1G08620 55.468 0.0 1243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mal1g1237 JmjC 3.9e-45 CL0029