Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1215 ATGGAAGCAGACCCTGAACTTCAACTCTCTTTAGGCCCTAGAGAATACACCATTATCATCAATGGGGAAATAACCAAAAGGGTTATAAAGCCACCACAATCTCTTATCCCTTTCTCCACCGCTACTAATTCTTCTACTGGAGAAGGAGGAGGAGGAGGAGGAGGAGCAGGTTACAAAGTGTATAAATGCATAACATGTAACAAAACTTTCCCTACATTTCAAGCACTTGGAGGCCATAGAAATGGTCACAAGAAGCCTAGAGATGATTATCAAGAGTTTCAATTCAAAACCAATAATGAACCAGTTTCCCTTCAATTGAATAAAAATATTAATGGTAAGAGAAATCTATATGGTGGAAACAACAACAAATCTAAGGTTTATGGGTGCTCCGTTTGTGGTTCTAGATTCACATCTGGACAGGCACTTGGTGGCCATATGGCCTGCCACCGTCCAATGGAGACCGCATCCTCCTCGACACCAGTGGCTTTGGAGCTAGATGAAGATCCACCTATAAAGAAAATGAATGCCATGCCTTTGGATTTGGATCTCAACCTTCCAGCAGCTGAAGAAGATGAAAGAGAATCCAAGTTTGCCTTTTCATCCAAGCAACAACAAACAAGTCTTGTTTTCTCTGCACCAGCATTGGTGGATTGTCATTACTGA 663 0.4178 MEADPELQLSLGPREYTIIINGEITKRVIKPPQSLIPFSTATNSSTGEGGGGGGGAGYKVYKCITCNKTFPTFQALGGHRNGHKKPRDDYQEFQFKTNNEPVSLQLNKNINGKRNLYGGNNNKSKVYGCSVCGSRFTSGQALGGHMACHRPMETASSSTPVALELDEDPPIKKMNAMPLDLDLNLPAAEEDERESKFAFSSKQQQTSLVFSAPALVDCHY* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1215 220 Gene3D Classic Zinc Finger 58 149 - -
Mal1g1215 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Mal1g1215 220 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Mal1g1215 220 PANTHER ZINC FINGER PROTEIN ZAT5 52 220 - -
Mal1g1215 220 Pfam C2H2-type zinc finger 60 86 - -
Mal1g1215 220 Pfam C2H2-type zinc finger 126 150 - -
Mal1g1215 220 SUPERFAMILY beta-beta-alpha zinc fingers 59 149 IPR036236 -
Mal1g1215 220 SMART c2h2final6 61 83 IPR013087 -
Mal1g1215 220 SMART c2h2final6 127 149 IPR013087 -
Mal1g1215 220 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 52 220 - -
Mal1g1215 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 127 154 IPR013087 -
Mal1g1215 220 ProSitePatterns Zinc finger C2H2 type domain signature. 129 149 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1215 Mal-Chr1 15328126 15328788 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1215 52 220 C2H2 Transcription Factor Family AT5G04390 41.553 3.84e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g1215 zf-C2H2_6 2.9e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1215 - - gmx:100799383 203.756