Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1208 ATGGAAGCAGACCCTGTACTTCAACTCTCTTTAGGCTCTAGAGAACACACCATTATCATCAATGGGGAAATAACCAAAAGGGTTATAAAGCCACCACAATCTCCTATCCCTTTCTCCACCACTGCTAATTCTTCTACCGGAGAAGGAGGAGGAGGAGAAATAGCAGGTTACAAAGTGTATGAATGCATAACATGTAACAAAATTTTCCCTTCATTTCAAGCACTTGGAGGCCATAGAAATGGTCACAAGAAGCCTAGAGATGATGCTCAAGAGTTTCAATTCAAAACCAATAATGAATCAGTTTCCCTTCAATGGAATAAAAATATTAATGGTAAGAGAAATCTATATGGTGGAAACAACAACAACAACAAACCTAAGGTTTATGTGTGCTCCGTTTGTGGTTCAAAATTCACATCTGGGCAGGCACTTGGTGGCCATATGACCCGCCATCGTCCCCCGGAGGAGACTGCATCCTCCTCGACACCAATGGCTTTGGAACTAGATGAAGATCCACCTATAAAGAAAATGAATGTCATGCCTTTGGATTTGGATCTCAACCTTCCTGCAGCTGAAGAAGATGAAGGAGAATCCAAGTTTGCCTTTTCATCCAAGCAACAGAAAATAGGTCTTGTTTTCTCTACACCAGCTTTGGTGGATGGATTGTCATTACTGATAAGTGCAAGGTTTTAG 690 0.4145 MEADPVLQLSLGSREHTIIINGEITKRVIKPPQSPIPFSTTANSSTGEGGGGEIAGYKVYECITCNKIFPSFQALGGHRNGHKKPRDDAQEFQFKTNNESVSLQWNKNINGKRNLYGGNNNNNKPKVYVCSVCGSKFTSGQALGGHMTRHRPPEETASSSTPMALELDEDPPIKKMNVMPLDLDLNLPAAEEDEGESKFAFSSKQQKIGLVFSTPALVDGLSLLISARF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1208 229 SMART c2h2final6 128 150 IPR013087 -
Mal1g1208 229 SMART c2h2final6 60 82 IPR013087 -
Mal1g1208 229 Pfam C2H2-type zinc finger 127 152 - -
Mal1g1208 229 Pfam C2H2-type zinc finger 59 85 - -
Mal1g1208 229 Gene3D Classic Zinc Finger 57 150 - -
Mal1g1208 229 MobiDBLite consensus disorder prediction 142 162 - -
Mal1g1208 229 SUPERFAMILY beta-beta-alpha zinc fingers 58 150 IPR036236 -
Mal1g1208 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Mal1g1208 229 MobiDBLite consensus disorder prediction 30 50 - -
Mal1g1208 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Mal1g1208 229 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 53 219 - -
Mal1g1208 229 PANTHER ZINC FINGER PROTEIN ZAT5 53 219 - -
Mal1g1208 229 MobiDBLite consensus disorder prediction 34 48 - -
Mal1g1208 229 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Mal1g1208 229 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1208 Mal-Chr1 15214324 15215013 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1208 51 219 C2H2 Transcription Factor Family AT2G28200 41.711 1.81e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g1208 zf-C2H2_6 3.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1208 - - gmx:100819786 182.57