Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1200 ATGGCAACAAGAAGATATGCATTTGGAAGGTTGGATGAGGCAAATCATCCAGATTCCATTAGAGCAACCGTAGCTGAATTTTTCTCCACTTGCATCTTTGTCTTTGCTGGAGAAGGCTCTGCCCTTGCTCTAAGGAAGATGTATAAGGATGCAGGAGCATCATCTAGTGAACTAGTGGTACTTGCACTAGCTCATGCCTTTTCACTATTTGCTGCTATATCATCTAGCATGCATGTATCTGGTGGACATGTTAACCCTGCTGTTACTTTTGGTGCACTTCTTGGTGGTAGAATCTCTGTCCTTAGAGCTGTCTACTATTGGGTTGCTCAACTTCTTGGTTCTATAGTTGCTGCCCTCTTATTGAGGCTGGTTACTAATAACATGAGACCACAAGCATTCAATGTAGCATTTGATGTTGGAGCAGGAAACGCTCTTATACTTGAGATTGCCATGACATTTGGTTTAATGTATGTTGTGTATGCAACTGCCATTGATCCCAAAAGGGGTACAATAGGCACAATTGCACCCTTAGCAATTGCACTCGTAGTTGGAGCTAACATTCTAGCTGGTGGGCCATTTGATGGAGCCTGCATGAACCCTGCTCGGGCTTTTGGGCCTTCTTTAGTGGGCTGGAGATGGCATTACCATTGGATCTTCTGGGTTGGTCCATTTCTTGGAGCTGCAATAGCAGCACTTTTATATGAATACATTATGGTTCCAATTGAACCTCCTCATACTCATCCTCATCATCAACCTTTGGCTCCTGAAGATTACTAG 777 0.4363 MATRRYAFGRLDEANHPDSIRATVAEFFSTCIFVFAGEGSALALRKMYKDAGASSSELVVLALAHAFSLFAAISSSMHVSGGHVNPAVTFGALLGGRISVLRAVYYWVAQLLGSIVAALLLRLVTNNMRPQAFNVAFDVGAGNALILEIAMTFGLMYVVYATAIDPKRGTIGTIAPLAIALVVGANILAGGPFDGACMNPARAFGPSLVGWRWHYHWIFWVGPFLGAAIAALLYEYIMVPIEPPHTHPHHQPLAPEDY* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1200 258 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mal1g1200 258 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mal1g1200 258 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mal1g1200 258 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 258 - -
Mal1g1200 258 SUPERFAMILY Aquaporin-like 14 247 IPR023271 -
Mal1g1200 258 Gene3D Glycerol uptake facilitator protein. 4 242 IPR023271 -
Mal1g1200 258 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mal1g1200 258 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mal1g1200 258 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mal1g1200 258 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mal1g1200 258 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mal1g1200 258 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mal1g1200 258 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Mal1g1200 258 PANTHER AQUAPORIN-8 1 258 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1200 Mal-Chr1 15078814 15080628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1200 2 258 Major Intrinsic Protein MIP AT1G73190 67.424 1.12e-121 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1200 K09873 - gmx:100814469 431.024