Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1190 ATGACTAGGGGTAAGGTGAAACTTGCCTTTATCTCCAATCATTCGACCAGAAAGGCTACCTACAAGAAGAGAAAGAAGGGTATCATCAAAAAGGTGAGAGAACTCACTATTCTTTGTGGTATTGCAGCTTGTGCTGTAATTTCCAATCCTTTTGATTCTGAAACAGAGGTGTGGCCAGATCTAGAAGGAGCAAAACAAGTGATTGAGAAGTATCAAAATTCATATGCGAGAGATGAGACAAGGAATGTGAACCAAGAAAGTTTCCTTCTGCGAAGGATTACTAAAGCCAGGGAACAACTGGAAAAGCAAAGACAAGACAATCGTGAGAAAGAGCTGAACATTCTTATGATTGGGTGCATGCAAAACAAAAATTTGCCAGATGATTTAAGTGTTTCGGATTTGAAATACTTTGATAAGATGATTGACAAAAACATGAAGGAAATTGATGACAAAATTGCTGCACTCAATTTATCAAATTGA 480 0.375 MTRGKVKLAFISNHSTRKATYKKRKKGIIKKVRELTILCGIAACAVISNPFDSETEVWPDLEGAKQVIEKYQNSYARDETRNVNQESFLLRRITKAREQLEKQRQDNREKELNILMIGCMQNKNLPDDLSVSDLKYFDKMIDKNMKEIDDKIAALNLSN* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1190 159 Coils Coil 61 81 - -
Mal1g1190 159 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Mal1g1190 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal1g1190 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal1g1190 159 Coils Coil 86 113 - -
Mal1g1190 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal1g1190 159 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
Mal1g1190 159 PANTHER MADS BOX PROTEIN 2 155 - -
Mal1g1190 159 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Mal1g1190 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mal1g1190 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1190 Mal-Chr1 14904441 14904920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1190 3 123 Type I MADS-box Gene Family AT1G65330 47.541 4.76e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g1190 SRF-TF 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1190 - - mtr:MTR_5g047560 179.489