Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1189 ATGACTAGGGGTAAGGTGAAACTTGCCTTTATCTCCAATCATTCGACCAGAAAGGCTACCTACAAGAAGAGAAAGAAGGGTATCATCAAAAAGGTGAGAGAACTCACTATTCTTTGTGGTATTCCAGCTTGTGCTGTAATTTCCAATCCTTTTGATTCTGAAACAGAGGTGTGGCCAGATCTAGAAGGAGCAAAACAAGTGATTGAGAAGTATCAAAATTCATATGCGAGAGATGAGACAAGGAATGTGAACCAAGAGAGTTTCCTTCTGCGAAGGATTACTAAAGCCAGGGAACAACTGGAAAAGCAAAGACAAGACAATCGTGAGAAAGAGCTGAACATTCTTATGATTGGGTGCATGCAAAACAAAAATTTGCCAGATGATTTAAGTGTTTCGGATTTGAAATACTTTGATAAGATGATTGACAAAAACATGAAGGAAATTGATGACAAAATTGCTGCACTCAATTTATCAAATTGA 480 0.3771 MTRGKVKLAFISNHSTRKATYKKRKKGIIKKVRELTILCGIPACAVISNPFDSETEVWPDLEGAKQVIEKYQNSYARDETRNVNQESFLLRRITKAREQLEKQRQDNREKELNILMIGCMQNKNLPDDLSVSDLKYFDKMIDKNMKEIDDKIAALNLSN* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1189 159 Coils Coil 61 81 - -
Mal1g1189 159 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
Mal1g1189 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal1g1189 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal1g1189 159 Coils Coil 86 113 - -
Mal1g1189 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal1g1189 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mal1g1189 159 PANTHER MADS BOX PROTEIN 2 155 - -
Mal1g1189 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mal1g1189 159 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Mal1g1189 159 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1189 Mal-Chr1 14899509 14899988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1189 1 159 MADS-box Gene Family AT5G26630 42.500 3.41e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g1189 SRF-TF 2.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1189 - - gmx:100792290 181.03