Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1172 ATGGTCGTTAGCGGAGGCAAATCCTTAAAACGTATGAAAAGAAGAGTCACCGCCGATTACCACGATTTCTTTTCATTTCCTTCACCATCCCTCGCCGCATCAGAGAATTTCTCCGGCGGACCGTTTCGATCAAACGTCCACTCTTTTCTCACGAAGTACGCGCTTCTTCCACCGCCTTCGGCGTTGTTTCCGCACTTGCTGACGTGGCAGATCCTCTTCCGCGTCGGTGAGATCACCGACGGCGCTGAATCGGGACCGGCGGTGATTTGCCTTGATGTTGTGGAAGAGGATGTTGCTAGATCCAGATCTGTTTATTGTGATCAGTGCCGAGTTTTTGGTTGCAGCGGAAATCCAGTGTGTGGGAAACGTTACCATTTTATAATCAAAGCTGATGGGAGATCCATTGGTGGATACCACAAACCGTGTATGTGCTGTGGCGATATTTTGCATTTGTCAGAATCCAAGTGTAAGTCATGTAACCATGTGACAACCAATGATGATGTTGAAGACTGGGTGTACCACCAACTAGAGAACACAAGTCATCTTTTGCATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGATCTAGATTTCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGCTAGAAAAGTTAGCGTGATGGATGTTTCGAAGAAATATGGACTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGACATCCGTGGTATGGTGAGTGGGGATATAATTTTGGCTCTGGTAGCTATTGTCTCACACAGGAAGCATATAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCATCTTCCTCTCCCAGGAACAGAAGCCCCACTCACGTGTGCAGGATATGATATTGTATTACCAGTCTTTGTCAGAGCATGAGCTTGTAAATATGAGGGACCTATTTTGTTTTTTGATGGGTTTGTTGCATGATGCTCGCAAGACAGCCTCTAAGTCTGATGACATAACCTGCAAGAAGCGGCGAATTGATGCTCCTGGATTATCAAGCTCTTGGGAAAAGAGTGACGTTGAACGTGTGGAGGAAGCCATGCTCAGAGTACTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGTGGCCGATCTCTTAGGGGTGCTGTTTGCAAGGTGGCCTCTCCAGAGCTTCTTGATTATTGCCTTGCTGAACTGGGAGGAAAAGTGGTCTATGGTGGGGTTGTTAATAGCAGATGCAATCCTCAAACTGGAGTTAATGAATTCAGGATTGATGCTACAAATGGATTTATGGCCAACAATAATTCTTCGGGCTCAAAGTGTCCCTCTGAAGAGAATCTCCTGCAATGCTTGAGATATTTATACGAGTCTTTGCTTCATCCTCGGATGATGCTAAACTATGTTGATGAAGAGACAAGAACTCTTGCAATGAGCTCGGCTCAGAAGCTTCTTGACTGCAAGCAATTAGTAAAAGATTATTGTTCTGAGATGTTGCCAGTGTCAGATTTGTATAAATTACGCATCTCATGTCAGGTTGAACTAGTTGACCAATCTGAAGATACTGAAGCCAGAATTCCACCTGAAATAATTGTGCTGCCCATGAACGCCACGGTGTCTGACCTTAAGATTGAAGCAGCAAAAGCTTTTCAAGAAGTATATCTAATGTTTAGAAAATTTCAAGTTGACGAACTAGTTGGCTACAGCGGTGTAGAAGATTCCACCCAGGTCAAGCTCTTGTTAGGATCAAATGAAGTGGTTTGTGTCCGAGGAAAATACTCTGGGAAGAATGCTTTGAGCAAGTTTCGAATGGAACGCGGACTTGAGAGGTGGACTGTTGAGTGCAGCTGTGGGGCTAAGGATGATGATGGAGAGAGAATGATGGCTTGTGATACATGTGGAGTGTGGCGGCACACTAGGTGTTTTGGCATTCCGGATACTGCTCCTGTTCCAGCCCGTTTTGTTTGCTCGAGATGCCAAAACTGTGACTCAAAGCCTAAGTCAGGTGGGCACTGTAAAGATGAGACTGTGACTAGGGTTAGTACTAGTAGTAGTTGCATTGGAAATGGCTTGTCAGTGCCTTCTGATGTTCGTTAA 2121 0.455 MVVSGGKSLKRMKRRVTADYHDFFSFPSPSLAASENFSGGPFRSNVHSFLTKYALLPPPSALFPHLLTWQILFRVGEITDGAESGPAVICLDVVEEDVARSRSVYCDQCRVFGCSGNPVCGKRYHFIIKADGRSIGGYHKPCMCCGDILHLSESKCKSCNHVTTNDDVEDWVYHQLENTSHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGARKVSVMDVSKKYGLEYRLLHAIMKGHPWYGEWGYNFGSGSYCLTQEAYKSAVESLSNLPLSIFLSQEQKPHSRVQDMILYYQSLSEHELVNMRDLFCFLMGLLHDARKTASKSDDITCKKRRIDAPGLSSSWEKSDVERVEEAMLRVLRAVSGSNWVSGRSLRGAVCKVASPELLDYCLAELGGKVVYGGVVNSRCNPQTGVNEFRIDATNGFMANNNSSGSKCPSEENLLQCLRYLYESLLHPRMMLNYVDEETRTLAMSSAQKLLDCKQLVKDYCSEMLPVSDLYKLRISCQVELVDQSEDTEARIPPEIIVLPMNATVSDLKIEAAKAFQEVYLMFRKFQVDELVGYSGVEDSTQVKLLLGSNEVVCVRGKYSGKNALSKFRMERGLERWTVECSCGAKDDDGERMMACDTCGVWRHTRCFGIPDTAPVPARFVCSRCQNCDSKPKSGGHCKDETVTRVSTSSSCIGNGLSVPSDVR* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1172 706 SMART PHD_3 622 668 IPR001965 -
Mal1g1172 706 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Mal1g1172 706 PANTHER OS01G0877500 PROTEIN 1 675 - -
Mal1g1172 706 SUPERFAMILY FYVE/PHD zinc finger 610 669 IPR011011 -
Mal1g1172 706 CDD PHD_MMD1_like 622 667 - -
Mal1g1172 706 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 675 - -
Mal1g1172 706 Pfam PHD-finger 623 670 IPR019787 -
Mal1g1172 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 673 IPR013083 -
Mal1g1172 706 ProSiteProfiles Zinc finger PHD-type profile. 620 670 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1172 Mal-Chr1 14681257 14686686 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1172 86 667 PHD Transcription Factor Family AT5G22260 29.839 3.63e-84 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal1g1172 PHD 8.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1172 - - mtr:MTR_1g076990 1380.16