Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1125 ATGGAAAAGAGTGTTGCATATGAGAACGATCTCAACATGAAGGCAACTGAGCTTAGATTAGGACTTCCTGGATCAGATGAAGAAAAAGCTGTTAGTGTGAAAATTTCCAACAAAAGATCATTGAATGAAACTTCAAAGGATAGTAGTTCAAAAACTTCTGATGCAGCACCTCCTTCAAAGGCTAAGATTGTGGGGTGGCCACCAATAAGATCTTATAGGAAGAACAGTTTGCAAGAGGCTGAGGCTTCTGGGATTTATGTGAAAGTGAGTTTGGATGGAGCTCCTTACCTTAGAAAGATTGATTTGAGGGTTTATGGAGGTTATGCACAATTCCTCAAAGCTTTAGAAACCATGTTCAAGTTAACCATAGGTGATTATTCTGAAAAAGAAGGTTATAAAGGATCTGAATATGAACCTACATATGAAGATAAAGATGGTGATTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGACTAAGAATCATGAAAGGATCAGAAGCTAGAGGTGTTTGA 534 0.3801 MEKSVAYENDLNMKATELRLGLPGSDEEKAVSVKISNKRSLNETSKDSSSKTSDAAPPSKAKIVGWPPIRSYRKNSLQEAEASGIYVKVSLDGAPYLRKIDLRVYGGYAQFLKALETMFKLTIGDYSEKEGYKGSEYEPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGV* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1125 177 ProSiteProfiles PB1 domain profile. 84 171 IPR000270 GO:0005515
Mal1g1125 177 PANTHER AUXIN-INDUCED PROTEIN 10 177 - -
Mal1g1125 177 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 177 IPR003311 GO:0005634|GO:0006355
Mal1g1125 177 MobiDBLite consensus disorder prediction 24 62 - -
Mal1g1125 177 Pfam AUX/IAA family 40 176 IPR033389 -
Mal1g1125 177 Gene3D - 78 177 - -
Mal1g1125 177 SUPERFAMILY CAD & PB1 domains 75 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1125 Mal-Chr1 14029042 14030006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1125 87 175 B3 DNA Binding Superfamily AT4G23980 31.461 1.92e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mal1g1125 AUX_IAA 1.6e-50 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1125 K14484 - gmx:100527777 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2415 1 32560977 32562016 Mal1g1125 1 14029042 14030006 ECH
Mal1g1125 1 14029042 14030006 Mal1g1125 1 14029042 14030006 ECH