Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1107 ATGGGACACGGGCAATCTAAAAGCGAATTGCTCTATCAGCAAGTCAGTTATGGGAATTCTGATGGAATCAAAACCCTTCATAGAGAAGGTGCAGGCCTTGAGTGGATGGATAGAGAAGGAAAAACACCCTTGATTGTTGCTTGTATGAATCCTGAGCTTTATAATGTTGCTAAGACTTTGATTGAACTTGGAGCCAATGTCAATGCGTACCGCCCCGTATTGTGGTGGAAACTGGAATTGCAAACTTTCAACTACTTTTTAGGACGTCATGCTGGGACTCCGTTGCATCATGCAGCTAAAAGGGGCCTTGAAAGTATTGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTTTGCTCATGAATGATGATTGTCAAACTGCTATTGAGGTTGCCAGGGCCAAAGGAAATGCCAATGTTGTTCGTGCAATTGAGAGTCATATTTGCTTGTTCTCTGGTTGGTTGCGAGAGTTTCATGGACCTGGATTTCTAGAAGTATTAGCTCCTAATTTGGTTTCAAGAAAAGTTTGGGTGGTAATTTTACCAGTAGGCTCCCGTGTTCTCACCTGGCCTTACAAGTTGGAGCTTGCCGTATATTCTACTTTGCAGGATGCACGACCTCGTACACTTGTTGCTCTGTGGAAGGCCAAATTAGAAGAACCAAAGTTTCATCAGTCTGAGCCATCAGTGACAATTAGTGATAAGACTACCAAAACACGCCTTAAATTTGGGCCTGCAAGTGAGAATGACAGGCAACAACTTACTTGGTTTTCTAATGCTTGCAAAGGAATGCCACAGGTAAATCCAGCATTTTTGCATAATAATCTGCCTACAGTTCCACCAACAGCACCACCTGATGCTGAAGACCCAGAATTGGCTATGGCTATCCAAGCATCTATTCAGCATGCTATTCACGAGAGGCCAAGCTTTCCTGGTGCCCAGCCAAACTCTGAAGCAAGCTCTTCCATCAGTGGAGTGAATGCAGTGCAAGGTTTTCTTGGCACACCAAATCCAAGTACACATGATAGTGAGTCTGTAGCTGTTCCAGATGGCAATTCTCACCATGTCCAGAACGGTGACAATGTCTCTGCTGGTCTGGATTTGGATCCATCAGCTCCTCCACTTGCTGATGATGTTTCATTAGATGGCCCAATTCATTATCCATCAATTGATTTGAGCCCTGTTAATGTATCATCTCCAGTAGTTGAGAAGCTACCTAATGAAGAAGGGAAAACTGCTGATGGAAGTGGTTCAACGTGTGTGATATGTTTAGATGCTCCAGCAGAAGGAGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAATGAGGTTAAAACAAAGAAATGGGGTTGCCCCGTTTGTCGAGCTAAGATAGACCAGATCATTAAGCTATATCACGTCTGA 1413 0.4395 MGHGQSKSELLYQQVSYGNSDGIKTLHREGAGLEWMDREGKTPLIVACMNPELYNVAKTLIELGANVNAYRPVLWWKLELQTFNYFLGRHAGTPLHHAAKRGLESIVKLLLLHGANPLLMNDDCQTAIEVARAKGNANVVRAIESHICLFSGWLREFHGPGFLEVLAPNLVSRKVWVVILPVGSRVLTWPYKLELAVYSTLQDARPRTLVALWKAKLEEPKFHQSEPSVTISDKTTKTRLKFGPASENDRQQLTWFSNACKGMPQVNPAFLHNNLPTVPPTAPPDAEDPELAMAIQASIQHAIHERPSFPGAQPNSEASSSISGVNAVQGFLGTPNPSTHDSESVAVPDGNSHHVQNGDNVSAGLDLDPSAPPLADDVSLDGPIHYPSIDLSPVNVSSPVVEKLPNEEGKTADGSGSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQIIKLYHV* 471
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1107 470 Gene3D - 3 159 IPR036770 -
Mal1g1107 470 SMART ring_2 419 457 IPR001841 -
Mal1g1107 470 Pfam Zinc finger, C3HC4 type (RING finger) 417 464 - -
Mal1g1107 470 MobiDBLite consensus disorder prediction 327 359 - -
Mal1g1107 470 MobiDBLite consensus disorder prediction 327 368 - -
Mal1g1107 470 ProSiteProfiles Zinc finger RING-type profile. 419 458 IPR001841 -
Mal1g1107 470 SUPERFAMILY Ankyrin repeat 9 148 IPR036770 -
Mal1g1107 470 SUPERFAMILY RING/U-box 418 464 - -
Mal1g1107 470 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 470 - -
Mal1g1107 470 SMART ANK_2a 39 69 IPR002110 GO:0005515
Mal1g1107 470 SMART ANK_2a 90 119 IPR002110 GO:0005515
Mal1g1107 470 PANTHER ROLLING PEBBLES, ISOFORM B 1 470 - -
Mal1g1107 470 ProSiteProfiles Ankyrin repeat region circular profile. 90 116 - -
Mal1g1107 470 ProSiteProfiles Ankyrin repeat profile. 90 122 IPR002110 GO:0005515
Mal1g1107 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 469 IPR013083 -
Mal1g1107 470 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Mal1g1107 470 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Mal1g1107 470 Pfam Ankyrin repeat 93 121 IPR002110 GO:0005515
Mal1g1107 470 Pfam Ankyrin repeat 40 69 IPR002110 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mal1g1107 Mal-Chr1 13718451 13722718 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1107 409 467 C3H Transcription Factor Family AT3G06140 33.898 7.53e-09 55.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1107 - - gmx:100789309 687.952