Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mal1g1107 | ATGGGACACGGGCAATCTAAAAGCGAATTGCTCTATCAGCAAGTCAGTTATGGGAATTCTGATGGAATCAAAACCCTTCATAGAGAAGGTGCAGGCCTTGAGTGGATGGATAGAGAAGGAAAAACACCCTTGATTGTTGCTTGTATGAATCCTGAGCTTTATAATGTTGCTAAGACTTTGATTGAACTTGGAGCCAATGTCAATGCGTACCGCCCCGTATTGTGGTGGAAACTGGAATTGCAAACTTTCAACTACTTTTTAGGACGTCATGCTGGGACTCCGTTGCATCATGCAGCTAAAAGGGGCCTTGAAAGTATTGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTTTGCTCATGAATGATGATTGTCAAACTGCTATTGAGGTTGCCAGGGCCAAAGGAAATGCCAATGTTGTTCGTGCAATTGAGAGTCATATTTGCTTGTTCTCTGGTTGGTTGCGAGAGTTTCATGGACCTGGATTTCTAGAAGTATTAGCTCCTAATTTGGTTTCAAGAAAAGTTTGGGTGGTAATTTTACCAGTAGGCTCCCGTGTTCTCACCTGGCCTTACAAGTTGGAGCTTGCCGTATATTCTACTTTGCAGGATGCACGACCTCGTACACTTGTTGCTCTGTGGAAGGCCAAATTAGAAGAACCAAAGTTTCATCAGTCTGAGCCATCAGTGACAATTAGTGATAAGACTACCAAAACACGCCTTAAATTTGGGCCTGCAAGTGAGAATGACAGGCAACAACTTACTTGGTTTTCTAATGCTTGCAAAGGAATGCCACAGGTAAATCCAGCATTTTTGCATAATAATCTGCCTACAGTTCCACCAACAGCACCACCTGATGCTGAAGACCCAGAATTGGCTATGGCTATCCAAGCATCTATTCAGCATGCTATTCACGAGAGGCCAAGCTTTCCTGGTGCCCAGCCAAACTCTGAAGCAAGCTCTTCCATCAGTGGAGTGAATGCAGTGCAAGGTTTTCTTGGCACACCAAATCCAAGTACACATGATAGTGAGTCTGTAGCTGTTCCAGATGGCAATTCTCACCATGTCCAGAACGGTGACAATGTCTCTGCTGGTCTGGATTTGGATCCATCAGCTCCTCCACTTGCTGATGATGTTTCATTAGATGGCCCAATTCATTATCCATCAATTGATTTGAGCCCTGTTAATGTATCATCTCCAGTAGTTGAGAAGCTACCTAATGAAGAAGGGAAAACTGCTGATGGAAGTGGTTCAACGTGTGTGATATGTTTAGATGCTCCAGCAGAAGGAGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAATGAGGTTAAAACAAAGAAATGGGGTTGCCCCGTTTGTCGAGCTAAGATAGACCAGATCATTAAGCTATATCACGTCTGA | 1413 | 0.4395 | MGHGQSKSELLYQQVSYGNSDGIKTLHREGAGLEWMDREGKTPLIVACMNPELYNVAKTLIELGANVNAYRPVLWWKLELQTFNYFLGRHAGTPLHHAAKRGLESIVKLLLLHGANPLLMNDDCQTAIEVARAKGNANVVRAIESHICLFSGWLREFHGPGFLEVLAPNLVSRKVWVVILPVGSRVLTWPYKLELAVYSTLQDARPRTLVALWKAKLEEPKFHQSEPSVTISDKTTKTRLKFGPASENDRQQLTWFSNACKGMPQVNPAFLHNNLPTVPPTAPPDAEDPELAMAIQASIQHAIHERPSFPGAQPNSEASSSISGVNAVQGFLGTPNPSTHDSESVAVPDGNSHHVQNGDNVSAGLDLDPSAPPLADDVSLDGPIHYPSIDLSPVNVSSPVVEKLPNEEGKTADGSGSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQIIKLYHV* | 471 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mal1g1107 | 470 | Gene3D | - | 3 | 159 | IPR036770 | - | |
Mal1g1107 | 470 | SMART | ring_2 | 419 | 457 | IPR001841 | - | |
Mal1g1107 | 470 | Pfam | Zinc finger, C3HC4 type (RING finger) | 417 | 464 | - | - | |
Mal1g1107 | 470 | MobiDBLite | consensus disorder prediction | 327 | 359 | - | - | |
Mal1g1107 | 470 | MobiDBLite | consensus disorder prediction | 327 | 368 | - | - | |
Mal1g1107 | 470 | ProSiteProfiles | Zinc finger RING-type profile. | 419 | 458 | IPR001841 | - | |
Mal1g1107 | 470 | SUPERFAMILY | Ankyrin repeat | 9 | 148 | IPR036770 | - | |
Mal1g1107 | 470 | SUPERFAMILY | RING/U-box | 418 | 464 | - | - | |
Mal1g1107 | 470 | PANTHER | UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED | 1 | 470 | - | - | |
Mal1g1107 | 470 | SMART | ANK_2a | 39 | 69 | IPR002110 | GO:0005515 | |
Mal1g1107 | 470 | SMART | ANK_2a | 90 | 119 | IPR002110 | GO:0005515 | |
Mal1g1107 | 470 | PANTHER | ROLLING PEBBLES, ISOFORM B | 1 | 470 | - | - | |
Mal1g1107 | 470 | ProSiteProfiles | Ankyrin repeat region circular profile. | 90 | 116 | - | - | |
Mal1g1107 | 470 | ProSiteProfiles | Ankyrin repeat profile. | 90 | 122 | IPR002110 | GO:0005515 | |
Mal1g1107 | 470 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 398 | 469 | IPR013083 | - | |
Mal1g1107 | 470 | ProSiteProfiles | Ankyrin repeat profile. | 39 | 72 | IPR002110 | GO:0005515 | |
Mal1g1107 | 470 | ProSiteProfiles | Ankyrin repeat region circular profile. | 39 | 69 | - | - | |
Mal1g1107 | 470 | Pfam | Ankyrin repeat | 93 | 121 | IPR002110 | GO:0005515 | |
Mal1g1107 | 470 | Pfam | Ankyrin repeat | 40 | 69 | IPR002110 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mal1g1107 | Mal-Chr1 | 13718451 | 13722718 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mal1g1107 | 409 | 467 | C3H Transcription Factor Family | AT3G06140 | 33.898 | 7.53e-09 | 55.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mal1g1107 | - | - | gmx:100789309 | 687.952 |