Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1103 ATGTGCAACGGTTCGAATAGAAAACCTTGTCAAACTTGTTTGATTAGGGAAAATGAATGTGGAAGACAAGAAGAACTTCATCATAAGATTTCAGCTTTGCTTGAGTTTTCAGCAAAAGATGATGTAATGGCGTTCACAGATGCTGTTGAAAAAGATGATCATGATGTTGATGAGGTAGGGTTATGGTATGGAAGGAAGGTTGGATCAAAGAAAATGGGATATGAAGAGAGGACACCTCTTATGGTTGCTGCTTTATTTGGAAGCAAGGGTGTTTTGTCTTATATTCTCGGAACTGGTCGTGTTGATGTTAATCGAGTGTGCGGCTCAGATAGGGCTACCGCTCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTGCCGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCAGATGTTAGTTCTGCTGATGCGAACGGTAACAGGTGCAGTGACTTGATTGTCTCGGTTTCTAATAGTATCTTCGGTTCAAGGAAGAGGATACTACAAGGCATACTAGAAGGTGTAGATAATGTTGATGATGACGACGGCGATTTCCTTAAGGAAATAGGTTTCCAAATGGTTGAGCAGCAACAAGATGTAGGTACACCTCGAACTGAGAAGAAAGATTATCCCATTGATCCATCCCTACCTGACATAAAGAATGGAATATATAGTACAGATGAATTTAGAATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCATTTGTTCATCCTGGGGAAAACGCAAGGCGCCGTGATCCGAGGAAATATGATTACACATGTGTCCCTTGCCCCGAGTTTCGGAAGGGATCATGCAGCAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAATGCTGGCTTCATCCTGCTCAATACAAAACAAGGCTCTGCAATGATGAAACCGGATGCACGAGAAAGGTTTGCTTTTTCGCCCACAAACCAGAGGAGCTTAGACCGTTGTATGCTTCTACCGGTTCTGCTTTACCTTCACCTACATCATATTCAAATTCACCTAGTGCTTCTTCAATGGATTCTTTCACAATGAGCTCTCCGTCTTCTTTGATACAATCTACGTTTACGCCACCTTTGACTCCATCTGCAGCAGTATCGCCTACGGTTGGAACCATGTGGCAGACTCAGATTCAGCTTCATGCTGCAGTCCCTACCCTTCAGATGCCGAGAAGCAGATTTAAAACTGCACTGAATACTAGTAATAACGCTGAATTTCTCGAACTTGAAAATCGCCTTATAGGTCTTTCAACCCCTTCAAATTGGCTTGCAGTAGTGAATCCTACTAACCTTGAAAACATTTTTGGGTCATCAATACAATCTCCGACATCAATGCAGGTGCATCAAAACACGAACCAGCAACTATGGGGCTATCCTTTTGATCTTACCAATTCAAATGTGATTGGATCACCACAATTTAGAGTTGATGCCTTCTCGAAGCGGAGCCAAAGCTTTATTGAGCGCAGCAGCGTGGCAAGCTTTAATTCCAGGCTTCCTTCTACTACCTCAGTTGCCATCGAACCTTATACCTTCTCTGGTTGGGGATTCCCAAATGGAAAATTAGATTGGTCCATCCGCGGCGATGAACTTAATAAAATGAGGAAATCTTATTCTTTCGGCTTTCGAAACAGAAGTAGCACTTCAACAATGGCTGATGCATTAAGTGTCCATGATCCAGATGTATTTTTAAGACATGAATCTTGGGTTAATTCACTTGTGAAGGATGGTCCAACAATGTAA 1788 0.4239 MCNGSNRKPCQTCLIRENECGRQEELHHKISALLEFSAKDDVMAFTDAVEKDDHDVDEVGLWYGRKVGSKKMGYEERTPLMVAALFGSKGVLSYILGTGRVDVNRVCGSDRATALHCAVSGCSAASAEVVKLLLDASADVSSADANGNRCSDLIVSVSNSIFGSRKRILQGILEGVDNVDDDDGDFLKEIGFQMVEQQQDVGTPRTEKKDYPIDPSLPDIKNGIYSTDEFRMFTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYDYTCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYKTRLCNDETGCTRKVCFFAHKPEELRPLYASTGSALPSPTSYSNSPSASSMDSFTMSSPSSLIQSTFTPPLTPSAAVSPTVGTMWQTQIQLHAAVPTLQMPRSRFKTALNTSNNAEFLELENRLIGLSTPSNWLAVVNPTNLENIFGSSIQSPTSMQVHQNTNQQLWGYPFDLTNSNVIGSPQFRVDAFSKRSQSFIERSSVASFNSRLPSTTSVAIEPYTFSGWGFPNGKLDWSIRGDELNKMRKSYSFGFRNRSSTSTMADALSVHDPDVFLRHESWVNSLVKDGPTM* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1103 595 Gene3D - 27 167 IPR036770 -
Mal1g1103 595 SUPERFAMILY Ankyrin repeat 38 156 IPR036770 -
Mal1g1103 595 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 294 IPR000571 GO:0046872
Mal1g1103 595 SMART c3hfinal6 269 295 IPR000571 GO:0046872
Mal1g1103 595 SMART c3hfinal6 304 327 IPR000571 GO:0046872
Mal1g1103 595 Pfam Ankyrin repeats (3 copies) 70 143 IPR002110 GO:0005515
Mal1g1103 595 SMART ANK_2a 75 105 IPR002110 GO:0005515
Mal1g1103 595 SMART ANK_2a 110 142 IPR002110 GO:0005515
Mal1g1103 595 ProSiteProfiles Zinc finger C3H1-type profile. 269 296 IPR000571 GO:0046872
Mal1g1103 595 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 19 594 - -
Mal1g1103 595 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Mal1g1103 595 PANTHER UNKEMPT FAMILY MEMBER 19 594 IPR045234 -
Mal1g1103 595 Gene3D - 270 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1103 Mal-Chr1 13651451 13653238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1103 25 556 C2H2 Transcription Factor Family AT5G12850 41.707 5.46e-140 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal1g1103 Ank_2 2e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1103 - - mtr:MTR_1g075890 998.038