Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1079 ATGTCGAGTGGAAAGAAAAGTCGAGGTCGGCAAAAAATTGCAATGAAAAAGATGACCAATGAGAGCAACCTTCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGCGAGCTTTGCACACTTTGTGGTGCATATATTGCTCTCATTATATTCTCACCTAGTGAGAAGGTCTTTTCATTTGGTCACCCAAATATTGAAACGGTCATAGATCGTTATCTATCTCGGGTCCCACCCCAAAACAATGGCATCATGCAGTTCATTGAGGCTCATCGTAGCGTCAATGTGCACGAGCTTAATGCTTTATTGACTCGAATCAATGATCCATTAGACATCGAGAAGAATCGTGCGAATGAGCTGAGCCAACTGCGCAAGAACAATGAGGCTCAATTTTGGTGGACTCGTTCCATTGATGGGATGAATAAGGTCCAACTTGAATTAATCAAGAAGGCCTTAGAGGATATTAAAAAATTGATTGCACAACATGCTGATAAAGTTGTAATTCATGGTAATCCTACCCAAACCCTTCCACTATTTGTTGGAAATAGTTCATCCTCTGACATGCATCTCGAGCATCAATCAAATCCTGAAGAAGCTTCAACATTTCCGCCAGGATTTGTTCAAAACCCAATGTTACAACCTCATTTGTTTGACTTGAATAATATGGGTGGAGAAGGTGGACATGGACCCTATGGCTTCTTTTGA 714 0.416 MSSGKKSRGRQKIAMKKMTNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPSEKVFSFGHPNIETVIDRYLSRVPPQNNGIMQFIEAHRSVNVHELNALLTRINDPLDIEKNRANELSQLRKNNEAQFWWTRSIDGMNKVQLELIKKALEDIKKLIAQHADKVVIHGNPTQTLPLFVGNSSSSDMHLEHQSNPEEASTFPPGFVQNPMLQPHLFDLNNMGGEGGHGPYGFF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1079 237 Gene3D - 88 175 - -
Mal1g1079 237 PANTHER MADS BOX PROTEIN 7 182 - -
Mal1g1079 237 Coils Coil 148 168 - -
Mal1g1079 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mal1g1079 237 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mal1g1079 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mal1g1079 237 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Mal1g1079 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal1g1079 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal1g1079 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mal1g1079 237 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Mal1g1079 237 Coils Coil 113 133 - -
Mal1g1079 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mal1g1079 237 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1079 Mal-Chr1 13334986 13335699 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1079 5 189 Type I MADS-box Gene Family AT5G60440 48.404 1.89e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g1079 SRF-TF 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1079 - - mtr:MTR_1g105905 282.722