Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1077 ATGTCGAGTGGAAAGAAAAGTCGAGGTCGGCAAAAAATTGCAATGAAAAAGATGACCAATGAGAGCAACCTTCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGCGAGCTTTGCACACTTTGTGGTGCATATATTGCTCTCATTATATTCTCACCTAGTGAGAAGGTCTTTTCATTTGGTCACCCAAATATTGAAACGGTCATAGATCGTTATCTCTCTGGGGTCCCAACCCAAAACAATGGCATCATGCAGTTCATTGAGGCTCATCGTAGCGTCAATGTGCACGAGCTTAATGCTTTACTGACTCGAATCAATGATGCATTAGACATCGAGAAGAATCTTGCGAATGAGCTGAGCCAACTGCGCAAGAACAATGAGGCTCAATTTTGGTTGACTCGTTCCATTGATGGGATGAATAAGGTCCAACTTGAATTATTCAAGAAGGCCTTAGAGGATATTAAGAAATTGATTGCACAACATGCTGATAAAGTTTTAATTCAGGGTAATGCTACCCAAACCCTTCCACTATTTGTTGGAAATAGTTTATTCTCTGACATGCATCTCGAGCATCAATCAAATCCTGAAGAAGCTTCAATATTTTTGCCAGGATTTGTTCAAAACCCAATGTTACAACCTCATTTGTTTGACTTCAATAATATGGGTGGAGAAGGTGGACATGGCCTTTATGGCTTCTTTTGA 714 0.4076 MSSGKKSRGRQKIAMKKMTNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPSEKVFSFGHPNIETVIDRYLSGVPTQNNGIMQFIEAHRSVNVHELNALLTRINDALDIEKNLANELSQLRKNNEAQFWLTRSIDGMNKVQLELFKKALEDIKKLIAQHADKVLIQGNATQTLPLFVGNSLFSDMHLEHQSNPEEASIFLPGFVQNPMLQPHLFDFNNMGGEGGHGLYGFF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1077 237 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 180 - -
Mal1g1077 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mal1g1077 237 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Mal1g1077 237 PANTHER MADS BOX PROTEIN 7 180 - -
Mal1g1077 237 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Mal1g1077 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mal1g1077 237 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mal1g1077 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal1g1077 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal1g1077 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mal1g1077 237 Coils Coil 109 129 - -
Mal1g1077 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1077 Mal-Chr1 13313442 13314155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1077 5 186 Type I MADS-box Gene Family AT5G60440 48.649 7.83e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g1077 SRF-TF 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1077 - - mtr:MTR_1g106070 266.544