Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1069 ATGAGAGCTAAGAGTTTGATAAGTAAGAGAAAGTTTAGCATAAGAAGGAAATTGAGGAAGATGATAAAGTGTGTGTGTTCAAGGGAGAATTTAAGTGTAGATGAAATGAATTATTCATCAGAGTCTCTTGCAACTAGGGACTATTCAGCAACAGCAAGTGGTTATTCATCTCGTCCTGGCGAAAATGAAACTAAGTTGGATAATAGTAACATTGAAGAAGCAGAATCCTCTCTTCGCGAAAGTGGTTATTTAAATTATGAGGAAGCTAGAGCCTTGTTAGGAAGACTTGAGTATCAGAAAGGCAACATTGAAGCTGCACTTCATGTATTTGAAGGAATAGATATTGCTGCTGTCATTCCAAAGATGAAAATTTCTATATCTAGAAAATGTGAATCCAATAATAAACGCCGCCCACAAAGTGATTCAGTGCCTTCTATGTCAATACATGCTGTTAGTTTACTTCTTGAAGCTGTTTTTCTCAAGGCTAAATCATTGCAAACTCTTGGAAGGTTTCAAGAAGCTGCTCAATCTTGCAAAACTATTTTAGACACTGTTGAGTCTGCATTACCAGAAGGCTGGCCTGAAAACTTTATTTTTTCAGACTGTAAATTACAAGAGACAGTGACAAATGCTGTTGAACTTCTTCCACAGTTATGGAACCTTGCAGGCTCACCTCAAGATGTTATTTTATCATTTAGGAAAGCCTTGCTTTATCATTGGAATCTAGATATTGAAGCAGAGGCAAGAATTCAAAAGGAGTTTGCATTGTTTCTTTTGTACAGCGGTTATGAAGCGGATTCTCCTTCGCTTCGGTCTCAGTTGGACGGTTCCTTTGTGCCTAGAAACAACATAGAAGAAGCTGTTCTTCTACTTCTGATTCTGCTGAGAAATTCTAAAGATCGTTCAATAATTCATCACCTTTCTTTCGCTCTGAGTGTTTGTGGTGAATTCATGACACTAGCTCAACAACTTGAGGAATTACTTCCAGAAACAACGGAGAGAAGAGAAAGATATTACACTCTCGCTCTTTGTTACTGCGGTGAAGGCGAGCATATAGTTGCTTTGGATCTTTTGAGGAACTTTTTGAATAATAGAGAGAACTCAGTATACTCAGATTGCATAGAGGAATTGCTTTTAGCTTCAAAAATTTGTGCAGACAACAAGGTTTGCGTCGAAGACGGAATCAAATTTTCTAGCAAGGCAATTTCTCATATGTATGGAAAATGTAATCAAATGGAAGCTATTGCAAATTGTTTACTAGGTGTTCTACTGTCGGCAAAATCAAAGTCATTTTCTTGTGAATCAGAGAAAGTATTGATACAATCTCAAGCATTTAGTGCTCTAAAAGCTGCCGAGAGATCGATGAGCGAAAATGATCCGTACATTGTTCTTAATCTTTGTCTAGAATATGCTGAACATAGGGAGTTAAGAATCGCTTATGACCATGCAAAGAAATTGATAAAGCTGGAAGGTGGATCTAGTATTAGTGGATTTATACTACTAGCACGGATTTTATCGGCTCAAAAAAAGTTTGTAGATGCAGAGATTGTTATCGATGCTGCTTTAGATCAAAGCGTAAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAGCTTCAGATTGCACAAGGAAGATTAAAAAATGCCATTGAGACGTACACTTTTTTTCTTGCTATTCTTCAAGTCCAAAATAAAAGTCTAGGCACTACAAATAAGGTTATGAAGTATAAGAAAAATCGCGACAGAAGACTAGAAATGGAAGTGTGGCATGATTTGGCCAATGTGTACACAATGTTATCACAGTGGCATGATGCTGAAGTTTGTCTTGCTAAATCTCAAGCTATTGATCCTTATTCAACTTCTAGATGGCACTCCACAGGTTTACTTTATGAAGCAAGAGGTCTTCATCAAGAAGCATTGAAATCATATAAAAAAGCATTAGATATTGATCCAAACCATGTGGCTAGTTTGGTATCAACAGCTTGTGTTCTAAGAAAACATGGTGTACAATCATCATCTTCAATTGTTAGAAGCCTTCTCACTGATGCATTAAGGCTTGACAGAACAAACTCATCTGCTTGGTACAATCTTGGACTTCTCTACAAGGCTGATTTGGGAACATCAGCATTGGAAGCAGCTGAATGCTTTGAAGCAGCTGTTTTTCTTGAAGAATCTTCTCCAATTGAACCCTTTAGATGA 2202 0.3724 MRAKSLISKRKFSIRRKLRKMIKCVCSRENLSVDEMNYSSESLATRDYSATASGYSSRPGENETKLDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVIPKMKISISRKCESNNKRRPQSDSVPSMSIHAVSLLLEAVFLKAKSLQTLGRFQEAAQSCKTILDTVESALPEGWPENFIFSDCKLQETVTNAVELLPQLWNLAGSPQDVILSFRKALLYHWNLDIEAEARIQKEFALFLLYSGYEADSPSLRSQLDGSFVPRNNIEEAVLLLLILLRNSKDRSIIHHLSFALSVCGEFMTLAQQLEELLPETTERRERYYTLALCYCGEGEHIVALDLLRNFLNNRENSVYSDCIEELLLASKICADNKVCVEDGIKFSSKAISHMYGKCNQMEAIANCLLGVLLSAKSKSFSCESEKVLIQSQAFSALKAAERSMSENDPYIVLNLCLEYAEHRELRIAYDHAKKLIKLEGGSSISGFILLARILSAQKKFVDAEIVIDAALDQSVKWDQGELLRTKAKLQIAQGRLKNAIETYTFFLAILQVQNKSLGTTNKVMKYKKNRDRRLEMEVWHDLANVYTMLSQWHDAEVCLAKSQAIDPYSTSRWHSTGLLYEARGLHQEALKSYKKALDIDPNHVASLVSTACVLRKHGVQSSSSIVRSLLTDALRLDRTNSSAWYNLGLLYKADLGTSALEAAECFEAAVFLEESSPIEPFR* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1069 733 SMART tpr_5 587 620 IPR019734 GO:0005515
Mal1g1069 733 SMART tpr_5 155 188 IPR019734 GO:0005515
Mal1g1069 733 SMART tpr_5 495 528 IPR019734 GO:0005515
Mal1g1069 733 SMART tpr_5 621 654 IPR019734 GO:0005515
Mal1g1069 733 ProSiteProfiles TPR repeat profile. 621 654 IPR019734 GO:0005515
Mal1g1069 733 MobiDBLite consensus disorder prediction 51 72 - -
Mal1g1069 733 Gene3D Tetratricopeptide repeat domain 624 725 IPR011990 GO:0005515
Mal1g1069 733 Pfam Tetratricopeptide repeat 624 654 IPR019734 GO:0005515
Mal1g1069 733 Gene3D Tetratricopeptide repeat domain 441 623 IPR011990 GO:0005515
Mal1g1069 733 ProSiteProfiles TPR repeat region circular profile. 621 654 - -
Mal1g1069 733 SUPERFAMILY TPR-like 156 370 IPR011990 GO:0005515
Mal1g1069 733 SUPERFAMILY TPR-like 458 559 IPR011990 GO:0005515
Mal1g1069 733 PANTHER PROTEIN NPG1 13 733 IPR043376 -
Mal1g1069 733 Gene3D Tetratricopeptide repeat domain 137 423 IPR011990 GO:0005515
Mal1g1069 733 PANTHER OS10G0471400 PROTEIN 13 733 - -
Mal1g1069 733 SUPERFAMILY TPR-like 530 703 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1069 Mal-Chr1 13194582 13197698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1069 14 733 Calmodulin-binding Proteins AT4G28600 51.556 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1069 K21843 - gmx:100789469 1110.9