Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1066 ATGAATTCAAGTGAAGAAGGTGATGATGATTATGATCAAGGAAAAAAACGTTCTTATGAATGCACATTTTGCAAAAGAGGATTCACAAATGCTCAAGCTTTAGGTGGTCACATGAATATCCATAGGAAAGATAGAGCTAAGGCTAGTAAGAAATCAAATTCTTCTTCATCACAAAGTGCAAACAAATTCTACACCAATGATGAAACTGTGGCTTTTCCTTTTGCTTCACAACAAAATTCCTTTGTTGGAAATTACCAACCTTCAAATATGCATGGTTATTCATATGAATATCCAACATCAACACCAAATCACCTTGTTGGAAATTACCAACCTTCAAATGTACATGATTTTTCATATGATTATCCAAGACCATCATCTAATTGGCCTAATATGCATTTCAACCAAGAGCTTCAAGGTCCTAATTTGAGTCTTCAAATTGGTTCAAGTCATCATTATGTGGATAATACTCATCATCAAAGAATTAGGAGAGGAAATGATCCGGAAGAAAATGAAGTGGACTTGGAGCTGAGACTTGGCCATGATCCATGA 549 0.3515 MNSSEEGDDDYDQGKKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKASKKSNSSSSQSANKFYTNDETVAFPFASQQNSFVGNYQPSNMHGYSYEYPTSTPNHLVGNYQPSNVHDFSYDYPRPSSNWPNMHFNQELQGPNLSLQIGSSHHYVDNTHHQRIRRGNDPEENEVDLELRLGHDP* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1066 182 Gene3D Classic Zinc Finger 9 79 - -
Mal1g1066 182 PANTHER OS07G0101800 PROTEIN 4 182 - -
Mal1g1066 182 SMART c2h2final6 19 41 IPR013087 -
Mal1g1066 182 Pfam C2H2-type zinc finger 19 43 - -
Mal1g1066 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Mal1g1066 182 MobiDBLite consensus disorder prediction 35 60 - -
Mal1g1066 182 SUPERFAMILY beta-beta-alpha zinc fingers 16 45 IPR036236 -
Mal1g1066 182 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Mal1g1066 182 MobiDBLite consensus disorder prediction 158 182 - -
Mal1g1066 182 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1066 Mal-Chr1 13170852 13171400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1066 19 65 C2H2 Transcription Factor Family AT5G43540 62.000 9.13e-16 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g1066 zf-C2H2_6 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1066 - - cam:101503281 174.866