Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1027 ATGAGCTTCTTGAGGCCATCTGCGATGTACAACTTTGTGTTTACTTATCCTTCTTCACGATGGATGCCATGTCAGAGTTGGGGATTCCTTCGATGGCCGGGTCCTGAAGGTTTCTTTAGACTTCTTGTGGTTTTCCTTCTTTGGTCTACCTTCTCCCACCTAAACTACATACCTTCTTCTACCATGTATCCTACCCTTCGTGTTGGCGATCGAATTATTGTTGAAAAGGCTTCATATTATATCAGGAGTCCTTCTATACATGATATTATAACATTTCGGGACCCAACACAGCATTCTGGAGATAACACAGATGTAATTTTTATTAAGAGAGTTGTCGCAAAAGAAGGAGACACTGTTGAGGTTCATCATGGAGGACTCTATGTTAACGGTGTTGCTCGAGAGGAGGATTTCGTGGTAGAGCCACCAACATACACAACAAAACTAACTTATGTGCCGAAAGGTCATGTTTATGTGTTGGGGGATAATCGCAACAATAGCTATGATTCCCATATATGGGGTCCACTTCCTATGAAAAACATAGTTGGAAGATATGTCATGTGCTGTCACAGACCAACAAATTGA 582 0.4158 MSFLRPSAMYNFVFTYPSSRWMPCQSWGFLRWPGPEGFFRLLVVFLLWSTFSHLNYIPSSTMYPTLRVGDRIIVEKASYYIRSPSIHDIITFRDPTQHSGDNTDVIFIKRVVAKEGDTVEVHHGGLYVNGVAREEDFVVEPPTYTTKLTYVPKGHVYVLGDNRNNSYDSHIWGPLPMKNIVGRYVMCCHRPTN* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1027 193 Pfam Signal peptidase, peptidase S26 38 186 IPR019533 GO:0004252|GO:0006465
Mal1g1027 193 ProSitePatterns Signal peptidases I signature 3. 156 169 IPR019758 GO:0004252|GO:0016021
Mal1g1027 193 PANTHER CHLOROPLAST PROCESSING PEPTIDASE-LIKE 1 193 - -
Mal1g1027 193 SUPERFAMILY LexA/Signal peptidase 51 186 IPR036286 -
Mal1g1027 193 PRINTS Bacterial leader peptidase 1 (S26A) family signature 107 119 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mal1g1027 193 PRINTS Bacterial leader peptidase 1 (S26A) family signature 151 170 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mal1g1027 193 PRINTS Bacterial leader peptidase 1 (S26A) family signature 50 66 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mal1g1027 193 CDD S26_SPase_I 54 183 IPR019533 GO:0004252|GO:0006465
Mal1g1027 193 TIGRFAM sigpep_I_bact: signal peptidase I 41 187 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mal1g1027 193 PANTHER SIGNAL PEPTIDASE I 1 193 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mal1g1027 193 Gene3D Umud Fragment, subunit A 59 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1027 Mal-Chr1 12316974 12320008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1027 62 185 MADS-box Gene Family AT1G29960 32.540 8.22e-10 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1027 K03100 - gmx:100306121 339.732