Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1000 ATGGAGCTTGCTTTGGATAGTACAAAACTACAATTACAACCACAAAACTTGAAGCAAGAACAACAACATTTTCATGTGTTGGCAGTAGATGATAGTGTCGTTGATAGGATGCTTCTAGAGAGGCTCCTTAGAGATTCTTCATGCAAAGTTACATGTGTGGACTCTGGAGATAAGGCTTTGAAATATCTTGGACTGAATATTGATGAAACAAAGTCTTCTTTATTAGAATCATCATCATCTTCTCCTCTTCCTCAACCATTGCAGCTGCAAGAGGGAAGGAAAGTGAATTTGATCATGACAGATTATTGCATGCCTGGAATGAGTGGCTATGATTTACTTAAAAGAGTCAAGGGATCTTCTTGGAAAGATGTTCCAGTTGTGGTTATGTCATCAGAAAATGTACCTTCCAGAATTAGCATGTGCATGGAAGAAGGGGCAGAAGAGTTTCTAATGAAGCCTCTTCAGATATCAGATTTGCAGAAGCTTCAACCATACTTCCTAAAATCCCTTGAAAATTCTTCTGATGAACAAGAATCTGCTAACAGTTCAACTTCCACCATAGATTCGGACGATGATAACGATCTCATCGACAGCAACAATAACAGCAATGATGATGATAACAATAATAGTATCAGCAAAAGGAAGGCTATGTCTCCTGAGCCTCCAGAGAGATCAATGCCCAAAATGAAAGGGTTGGCGGTGGTGGTGTAA 711 0.3938 MELALDSTKLQLQPQNLKQEQQHFHVLAVDDSVVDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDETKSSLLESSSSSPLPQPLQLQEGRKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVVMSSENVPSRISMCMEEGAEEFLMKPLQISDLQKLQPYFLKSLENSSDEQESANSSTSTIDSDDDNDLIDSNNNSNDDDNNNSISKRKAMSPEPPERSMPKMKGLAVVV* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1000 236 ProSiteProfiles Response regulatory domain profile. 25 167 IPR001789 GO:0000160
Mal1g1000 236 SMART REC_2 24 163 IPR001789 GO:0000160
Mal1g1000 236 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 12 234 - -
Mal1g1000 236 MobiDBLite consensus disorder prediction 171 189 - -
Mal1g1000 236 MobiDBLite consensus disorder prediction 200 215 - -
Mal1g1000 236 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 234 IPR045279 GO:0009736
Mal1g1000 236 MobiDBLite consensus disorder prediction 171 236 - -
Mal1g1000 236 Gene3D - 25 215 - -
Mal1g1000 236 CDD REC_typeA_ARR 26 162 - -
Mal1g1000 236 Pfam Response regulator receiver domain 86 161 IPR001789 GO:0000160
Mal1g1000 236 SUPERFAMILY CheY-like 24 164 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1000 Mal-Chr1 12039629 12042264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1000 19 169 Response Regulator Gene Family AT2G41310 55.921 2.50e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal1g1000 Response_reg 1.4e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1000 K14492 - gmx:100786187 295.049