Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g0987 | ATGGAACGCGAAGAGGGAAAACAATCTTCCCAAAAAAATCCATACACTGAACTTGAGGAAGTTAGCTCTGATTTTATGCTAGCAATTGGCTTGCAAGAACAAGAGTTAGAGAGATCAACATTCACAAATCTAGCAACCATTGAAAGTGAAAGTGATGAAGATGTAAGTGACTCCTCTTTTAGTAATGATGATATTGGTGATGCTGATTTTTCATTTAGTCAGGAGTTCGAAACCGATCTTCAGTTTCTTGAAGATGAAGGAAGCAATATTGAAGATGACGATTATGAAGACGATGAAATGGAGTTGGAAGAAGATGAGATTGATCCAGATGAATTATCTTATGAAGAGTTAATTGAATTAGGAGACTTTATAGGAGAAGAAAAGAGAGGATTATCAGCTAATGAAATTTCTTCTTGCTTATATCCTTATACTTGCAAAATTGCTGAAAGCACAAGTGGAATAGATCGTTGTGTGATTTGTCAGATTGAATATGAAGAAGGTGAAGCCTTGGTTGCACTTCATTGTGATCACCCTTATCATACAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTATCAACTCCCAACAAGGAGATTAAAAACACTTGA | 636 | 0.3569 | MEREEGKQSSQKNPYTELEEVSSDFMLAIGLQEQELERSTFTNLATIESESDEDVSDSSFSNDDIGDADFSFSQEFETDLQFLEDEGSNIEDDDYEDDEMELEEDEIDPDELSYEELIELGDFIGEEKRGLSANEISSCLYPYTCKIAESTSGIDRCVICQIEYEEGEALVALHCDHPYHTDCISKWLQIKKVCPICSNEVSTPNKEIKNT* | 212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g0987 | 211 | MobiDBLite | consensus disorder prediction | 42 | 68 | - | - | |
| Mal1g0987 | 211 | PANTHER | E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE | 1 | 206 | - | - | |
| Mal1g0987 | 211 | SUPERFAMILY | RING/U-box | 156 | 204 | - | - | |
| Mal1g0987 | 211 | ProSiteProfiles | Zinc finger RING-type profile. | 157 | 198 | IPR001841 | - | |
| Mal1g0987 | 211 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Mal1g0987 | 211 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 1 | 206 | IPR045191 | GO:0061630 | |
| Mal1g0987 | 211 | Pfam | Ring finger domain | 156 | 197 | IPR001841 | - | |
| Mal1g0987 | 211 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 208 | IPR013083 | - | |
| Mal1g0987 | 211 | SMART | ring_2 | 157 | 197 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g0987 | Mal-Chr1 | 11810268 | 11810903 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal1g0987 | 104 | 201 | C3H Transcription Factor Family | AT3G63530 | 48.515 | 3.57e-28 | 104 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal1g0987 | K19045 | - | gmx:100526881 | 290.041 |