Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0985 ATGACATATGTTGAGGCTGCACGAAACTTTTCTTTCGGTTTTCATTACGAAAGTCCCCGAATTCGTGTGTTTCCCTTAGTTTTGGATATTTTTGTCCAAAGGGTATTTGAGTATCGTAATGATTTTATCGCCAACACAGTTTTGTGGACTGAGTCAATGGAAGAAGTCCAATTTGTTCCTGCAACAAATGATGCTATCGAATCCCTCGAGAAGGTGAAGCTAGAAGATTGTGATACCATAGAAACGTGTGTCATTTGTCAAATTGATTTCAGCTGTGGAATGGAGGTTACAAAATTGCCTTGTGATCATCTTTATCATCAAGAATGTATTGTTCAATGGCTAAAAACTAGTCACATGTGCCCAGTGTGTCGTCACCCCATGCCTACTTCAACCGGTAGCTAA 402 0.398 MTYVEAARNFSFGFHYESPRIRVFPLVLDIFVQRVFEYRNDFIANTVLWTESMEEVQFVPATNDAIESLEKVKLEDCDTIETCVICQIDFSCGMEVTKLPCDHLYHQECIVQWLKTSHMCPVCRHPMPTSTGS* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0985 133 Pfam Ring finger domain 82 124 IPR001841 -
Mal1g0985 133 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 48 129 - -
Mal1g0985 133 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 48 129 - -
Mal1g0985 133 ProSiteProfiles Zinc finger RING-type profile. 83 124 IPR001841 -
Mal1g0985 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 130 IPR013083 -
Mal1g0985 133 SUPERFAMILY RING/U-box 66 130 - -
Mal1g0985 133 SMART ring_2 83 123 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0985 Mal-Chr1 11799588 11799989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0985 60 129 C3H Transcription Factor Family AT5G01980 40.278 5.25e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0985 - - mtr:MTR_3g088080 150.214