Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0975 ATGACAATTGATATCTCTAAGTTCTTCCAAAAACTTTGCAACAAAATTGCAATTTTTCTAATATTCGTGTTAGTAGAACTTACCATCCTCATTTGGAGACTAACATCAGATACGCAATCAATCACAACTCGCCAATACATGAAATTCATCGAAGAAAAGAACCCTACTGTTCGCTACACCAAAAAGACAAAATCAAACGGGGATTGTAGTGTGTGCTTATGCGAATTCGAAGAAAGAGAAAAAGTTAGGAGATTGAAATGCAAACACACATTTCATAAGGATTGTTTGGATAAGTGGTTGCAAGATTATTTTGCTACATGTCCACTTTGTAGGGAACAAGTTTTACCGGAACATGTTGTGTCCAAACATCGTCAGCAACGAAATCAACAAGGTAATTTTGAAGGGAATGATGAGAATCTTCCTTATGTGTTGTTCTTGTTGCGTGGTGGTAATAGTAGTCACTTGCGTAGATATGTTTGA 480 0.3625 MTIDISKFFQKLCNKIAIFLIFVLVELTILIWRLTSDTQSITTRQYMKFIEEKNPTVRYTKKTKSNGDCSVCLCEFEEREKVRRLKCKHTFHKDCLDKWLQDYFATCPLCREQVLPEHVVSKHRQQRNQQGNFEGNDENLPYVLFLLRGGNSSHLRRYV* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0975 159 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
Mal1g0975 159 Pfam Ring finger domain 68 111 IPR001841 -
Mal1g0975 159 SUPERFAMILY RING/U-box 49 117 - -
Mal1g0975 159 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 151 - -
Mal1g0975 159 CDD RING-H2_PA-TM-RING 68 111 - -
Mal1g0975 159 SMART ring_2 69 110 IPR001841 -
Mal1g0975 159 PANTHER - 3 151 - -
Mal1g0975 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 117 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0975 Mal-Chr1 11674984 11675463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0975 52 132 C3H Transcription Factor Family AT1G63840 39.286 2.04e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0975 K16282 - gmx:102668078 171.785