Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0929 ATGTCTAATCCGAACCTAGATTCCCATCACATGACCCAGATAACTCACCCGCAACAAGATCCAAACAGTACCCCCGACCCTCAGGTTCCGCTTCAGAACCTATCCTTGGTTCGGACGAGAATCGATTCTCTACGAACCTTCCTATCTCAATCCATCACCACCAACGCTCCTCTCACCAACGATCAATTAACTGCCGTCTCCAACCAAATCGCCTCCGCCATCCACCACACCATAGTCAACGCTGCCGCCCTCGTTCCCGGAGCCTCCGTCTTCCCTCCGATGAACCTCAGACCAGAACCCTCCGCCGTGGATAAAATTGAACCAGCTGACAACAACTTCATCGCCGTTGAAGGCTCCGATGACGATTGCGAAATCGTGGAACTCGACGCCATGGAATTGCTAGCAGAACATCTTCATTTCTGCGAGATTTGCGGCAAAGGTTTCAAGCGTGACGCGAATCTCCGGATGCATATGCGGGCGCACGGGAACAAATTCAAGACGCCGGAAGCGTTGGCGAAGCCTTTAAACGACGGAGCAAGCCGCCGTTCGACTCTGTTCTCTTGTCCGTTCGAAGGTTGTAACAGAAACAAGAAGCATAAGAAGTTCAGAGCGTTGAAGTCGATAATTTGCATGAAGAATCATTTCAAGAGGAGTCATTGTCCGAAGATGTATTCGTGTAATCGTTGTAATAAGAAGAATTATTCGGTGCTTTCGGATTTGAAGAGTCATATGAGGCAGTGTGGCGAGTCTAGGTGGAAGTGTTGTTGTGGAAGTAGTTTTTCTAGGAAGGATAAGTTGTTTGGACATGTTGCTTTGTTTGAGGGTCACATGCCTGCAGTTCTGTTGGAAGATGAGGAGAAAGGGAAACAAGTTGTGGCCGAAGAGAGTGAGGATCCTATGGAGATGACATTGAGTACTCAAGGTGAATTTGGTATGGATGAAGGGTTTTTTGATGATTTTGGGTCTATTGATGGGATTTCGTGGTAG 987 0.4802 MSNPNLDSHHMTQITHPQQDPNSTPDPQVPLQNLSLVRTRIDSLRTFLSQSITTNAPLTNDQLTAVSNQIASAIHHTIVNAAALVPGASVFPPMNLRPEPSAVDKIEPADNNFIAVEGSDDDCEIVELDAMELLAEHLHFCEICGKGFKRDANLRMHMRAHGNKFKTPEALAKPLNDGASRRSTLFSCPFEGCNRNKKHKKFRALKSIICMKNHFKRSHCPKMYSCNRCNKKNYSVLSDLKSHMRQCGESRWKCCCGSSFSRKDKLFGHVALFEGHMPAVLLEDEEKGKQVVAEESEDPMEMTLSTQGEFGMDEGFFDDFGSIDGISW* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0929 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Mal1g0929 328 MobiDBLite consensus disorder prediction 1 30 - -
Mal1g0929 328 Gene3D Classic Zinc Finger 212 279 - -
Mal1g0929 328 Gene3D Classic Zinc Finger 139 162 - -
Mal1g0929 328 SUPERFAMILY beta-beta-alpha zinc fingers 135 162 IPR036236 -
Mal1g0929 328 SMART c2h2final6 186 219 IPR013087 -
Mal1g0929 328 SMART c2h2final6 139 161 IPR013087 -
Mal1g0929 328 SMART c2h2final6 224 245 IPR013087 -
Mal1g0929 328 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 111 319 IPR044300 GO:0010044|GO:0010447
Mal1g0929 328 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 8 101 IPR044300 GO:0010044|GO:0010447
Mal1g0929 328 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Mal1g0929 328 Pfam Zinc finger, C2H2 type 140 161 IPR013087 -
Mal1g0929 328 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 111 319 - -
Mal1g0929 328 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 8 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0929 Mal-Chr1 11148607 11149593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0929 124 284 C2H2 Transcription Factor Family AT1G34370 58.182 2.10e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g0929 zf-C2H2 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0929 - - cam:101491258 491.5