Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0894 ATGAAGAAAACTTTTCCTACTAACCACACCCCCCATTTCCACCGTCAACCATCGCACTCCGGTTACTCCCCCTGCCCTGTTTACCGTCACCGGAGACCCGGATTACACTCTAACCACCGTCTTGACCGTCCTCCGGAGCGAAATCCACCTCATCGTCCTCCTAATTTCATCCTTAAGCTCCACCTCGGTCGCCGTGCACTCCAACGCGACGATGTTGACTCTCTGATCGGTAAATGCAAACCTAATCCTGATAATTACTCTTTCTACCCTTGCGATGGTGTTGCTGCGTCGCTCAATTTTCTGCAATGGACGGACGCGCGTGATGCTGTTGTTTGGTTCTGGGAATCTCGGCTTTCTGGAGGTCATGATTTCACGCCGGAGCTGATTTCGAATGTTATGGTGCCTTCCGATAGGGTAGAACTGGAAGGGAGTCTCAGAAGGGCTTTTGCAAGCCATGTGAAGGAATTGATGGAAGGGAAGGAAGTGAAGAAGTGGGTGGAAGAGTGGGATCGTGTATCGAAGGAGATTTCGCGTGTTGCGAGTTTGTTGGGTAAGCCTTTTCCGATTAGGGTGCAGGAGCAGAATATTCAGAGGAAGAAAGGGCTTGATGATGAGAAGAGTTTGATTGAGAGGAGATTGAAGGAGTTTGAGTATGCTATGGAATGTATTTTGCAGCATCTGGAAGAGAATAGTAACGTGGAGACTGGTGATGGTGATGGTTTTGTTCCTGTGTTTAGGTTTGGTGGAAGTTTTAATTGGGGGAAGATTCACAGTCTCATTGTCAGGGAGCGTCGGAGACTCGAAGAAGGATTGCCCATTTATGCGTACCGGAGGGAAATTCTTCAGCAAATACTTCATCAACAGATAACGGTGTTGATTGGAGAGACTGGTTCCGGGAAGAGTACTCAGATAGTGCAGTTTCTCGCGGATTCTGGCATTGGGGCTGATGAGACAATTGTGTGCACCCAGCCTCGGAAGATTGCTGCCAAGTCATTGGCTGAAAGGGTCAAGGAAGAAAGTAAAGGGTGTTATGAAGAAAATTCGATCCAGTGTTTTTCAACATTTTCATCCTGCGAGAAGTTTGATGATTCCAGGATAGCATTCATGACAGATCACTGTTTATTGCAGCAGTACATGAGTGATAGGAATTTGTCCGGGGTCTCATGTATCATAGTTGATGAGGCACATGAAAGGAGCTTAAATACTGATCTACTGTTGGCGTTAATAAAGAATTTACTTTGTAAGAGGGTTGAAATGCGGCTTATCATCATGTCTGCTACTGCTGATGCTAAGCAGCTATCTGATTATTTCTATGGTTGTGGAATTTTTCACGTGCTTGGGAGAAATTTCCCTGTGGAGGTGAGATATGTTCCTTCTGAATATGGAGAACATTCTGGTTCTGCTGTTATGGCCCCATACGTTTTTGATGTTGTCAAACTGGCAACCGAGATTCACAAAACAGAGAAAGAAGGAGCTATTCTTGCCTTTCTGACCTCACAGGTAGAAGTAGAATGGGCCTGCGAAAACTTTAAAGCCCTATCTGCAGTTGCTCTGCCCTTGCATGGGAAACTTTCGTCCGAGGAGCAATTTCATGTTTTCCAGAAATATCCTGGAAAAAGAAAAGTGATATTTTCAACGAATCTTGCAGAGACATCAATTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGGTTGGTTAAAGATTGCCGATTTGATCCTTGCAGTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTAATCAAAGGGCTGGTCGTGCCGGGAGGACTGAGCCTGGCAGGTGCTATAGGATGTACTCAGAAGCTGATTATCGCTCTATGGAACTAAATCAAGAACCTGAGATTCGAAGAGTTCATCTTGGTGTAGCAGTTTTGAAGATCCTTACTTTAGGGGTAAAGAATGTGCAGGATTTCGATTTTGTGGATGCTCCAAGCCATAGCTCTATTGAGATGGCAATCAGGAATCTAATTCAATTAGGATTCATTAAACTGAACAATAATGTTCATGAGCTAACTTATGAAGGTAGGTACTTGGCGAGAATGGGGATTGAACCTAGGCATGGTAAACTTATTCTTGGCTGTTTCCGGCTAGCTTTGGGTAGAGAAGGCATTGTCCTTGCTGCCATGATGCCCAATGCTAGTAACATATTTTGCAGATTTGGTAATGAAGGTGATAAACAAAGATCTGATTGTCTCAAAGTGCAATTTTGCCATCCTGATGGTGACCTTTTTACTCTTCTCTCGGTGTACAAGGAATGGGAAGCTCAGCCTCGAGATAGGAAGAATAAATGGTGTTGGGAAAACAGCATCAATGCCAAATGTATGAGGAGATGCCAAGACACAGTTTTGGAGTTAGAATCTTTCCTAGAGCGTGAACATGGTTTTGTTGTTCCAAGTTACTGGCGTTGGGACCCTCATACGCCTTCTGTTCATGATACGAATATGAAAAAGGTTATACTATCCTCACTTGCTGAAAATGTAGCCATGTTCTCTGGACGCAATCAACTTTATGAAGTAGCCCAAACTGGACAGCATGTTCAACTGCATCCATCTTCTTCCTTGCTCGTATTTGCTCAGCGGCCTAGTTGGGTGGTTTTTGGTGAGCTTCTCTCAGTGTCTAATGAATATTTGGTCTGTGTGAGTGCCGTTGACTTTCAATCATTATACAGCCTTCAACCTCCTCCCTTGTTTGATGTATCCAAGATGGAAGAGAGGAAGTTGCAAACGAAGACATTGACTGGCTTTGGAACTATTCTTCTCAAGAGATTTTGCGGGAAAGGCAACGGTAATATGTTTGGTCTTGCTTCACGTATTAGGAAAGCTTGTCTGGATGAAAGAATCTTTGTTGAAGTGAATATTGACGAGAATCTCATCCAGTTATATGCCACTTCACATGATATGAATACAGCTAGTATGATGGTGAATGATGTTTTAGAATATGAGAAAAAGAGGTTACGCACTGAATGTATGGAAAAATGTTTGTATCATGGGTCAGGTTCCTCATCACCTATGGCATTGTTTGGGTCTGGTGCTGAGATAAAGCATTTGGAACTTGAGAAGCATTCCTTGAGTGTTGATGTGTGTCACCCAAACGTAAATGAAATTGATGATAAGGAACTCCTGATGTTTTTTGAGAAGAATACCTCAGGTTGTATATGTGCAGTGTACAAGTTCCCTGGCATGGTGAAGGATGTTGAGGATAGAGAAAAGTGGGGCAAGATAACATTTTCGTCCCCTGATGCTGCCAAAAGAGCTGCGGAGCTGGATGGAGAAGAGTTTTGCGGATCCTCCTTGAAAATACTTCCTTCACACTCAGTTATAGGAGGGGATAAAACATTTTCATTTCCTGAAGTGAAAGCAAAAATTTTTTGGCCTCGTAGATTTAGCAAAGGATTTGGCATAGTTAAATGTGATAAAAATGATGTTGATTTCGTCTTGAGAGATTTTTATAACCTTGCAATCGGAGGTAGGTATGTTCGTTGTGCACTCGGTAATAAGTCCATGGACAGTATTGTGATAAGTGGGCTTGACAGAGAGCTTCCAGAAACTGAAATTTTGGATGTACTAAGAACTGCTACAAGTAGAAGGATTCTAGACTTTTTCTTGGTGAGGGGAGAGGCTGTTGGAAATCCGCCATGCAGTGCTTGCGAAGAGTCGCTCTTTAAAGAAATTTCCCCCTTAATTCCCAAAATAAACCCTCACGTTAGTTCTTGCCGCGTTCAGGTATTTCCACCTGAGCCGAAGGATTCTTTCATGAGAGCTTTAATTAATTTTGATGGAAGGTTACATTTAGAGGCAGCAAAAGCTCTGGAGAAAATTGAAGGAAAGGTGTTGCCTGGATGTCTTTCTTGGCAGAGGATAAAGTGCGAGCGGTTGTTTCATAGCTCCTTGATATTTCCCGCTCCAGTGTATCATGTTATTGCGGAACAACTGGATAAAATACTCACAAGCTTCAACAATTTAAACGGTCTTGAGTGGAACCTAAACAGAACTGCTAACGGTTCCCACCGATTGAAGATAACAGCCAGTGCCACAAAGACTGTGGCAGAAGTTAGGAGACCTCTGGAAGAACTGTCAAGAGGGAAAGTCATTGACCACGACAGTGTCACCCCTGCTGCTCTACAGCTCATGTTGTCCAGAGATGGAATTAGTCTTAAAAGCTCTATACAGCAAGAGACAAGAACTTACATTATTTTTGACAGGCAAAATCTGAGTTTACGGATTTTTGGTTCACCAGACAGGATTGCTTTGGCTCAGCAGAAGTTAATTCAATCTCTGCTCTCCCTCCATGAAAAAAAGCAGTTAGTAATCTCTCTGAGAGGGAAGGACCTACCTTCTGACTTAATGAAACAAGTGGTTAAGAATTTTGGGCCAGATCTTCATGGTCTAAAAGAGAAGGTACCCGGGGCTGATCTCGAACTTAACACACGCCAACAAATAATCTTTCTTCATGGTAAAAAGGAGTTAAAACCAAGAGTGGAGGAAATAACTCTGGAGATTGCGCGTTCAAGCCATCATTTAGTTGAGAGACTTGACACCGGACCTAGTTGCTCAATTTGCCTGTGTGAGGTTGAGGATGGATACCAACTTGAAGGCTGTGGTCATTTGTTCTGCCGGTTGTGTCTGGTGGAGCAGTGTGAATCTGCTATTAAAAACCAAGGCAGTTTCCCAATATGTTGTGCTCACCAAGGCTGTGGAGATCCTATTTTGCTTACAGATTTTAGAACTCTCCTGTCAAACGATAAGTTGGATGAACTTTTCAGGGCTTCTTTGGGAGCTTTTGTAGCTTCGAGTTCAGGAACTTATAGGTTTTGCCCGTCTCCTGACTGCCCCTCAGTTTATCGAGTTGCAGATCCCGACACAGCTAGTGAGCCATTCGTTTGTGGGGCATGCTATTCAGAGACCTGTACCAAGTGCCACTTAGAGTATCATCCATACCTTTCATGCGAGAGATACCGAGAACTCAAGGATGACCCAGATTCATCTCTGAAGGAGTGGTGTAAAGGGAAAGAGCAAGTGAAGAGCTGTTTTGCTTGCGGGCAAATAATTGAGAAGATAGATGGGTGCAATCACGTCGAGTGCAAGTGCGGAAAACATGTCTGCTGGGTTTGCTTGGAAATCTTTACAAGAAGTGATGATTGTTACGATCATTTGAGAACTATACACATGACCATATAA 5211 0.4337 MKKTFPTNHTPHFHRQPSHSGYSPCPVYRHRRPGLHSNHRLDRPPERNPPHRPPNFILKLHLGRRALQRDDVDSLIGKCKPNPDNYSFYPCDGVAASLNFLQWTDARDAVVWFWESRLSGGHDFTPELISNVMVPSDRVELEGSLRRAFASHVKELMEGKEVKKWVEEWDRVSKEISRVASLLGKPFPIRVQEQNIQRKKGLDDEKSLIERRLKEFEYAMECILQHLEENSNVETGDGDGFVPVFRFGGSFNWGKIHSLIVRERRRLEEGLPIYAYRREILQQILHQQITVLIGETGSGKSTQIVQFLADSGIGADETIVCTQPRKIAAKSLAERVKEESKGCYEENSIQCFSTFSSCEKFDDSRIAFMTDHCLLQQYMSDRNLSGVSCIIVDEAHERSLNTDLLLALIKNLLCKRVEMRLIIMSATADAKQLSDYFYGCGIFHVLGRNFPVEVRYVPSEYGEHSGSAVMAPYVFDVVKLATEIHKTEKEGAILAFLTSQVEVEWACENFKALSAVALPLHGKLSSEEQFHVFQKYPGKRKVIFSTNLAETSITIPGVKYVIDSGLVKDCRFDPCSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRMYSEADYRSMELNQEPEIRRVHLGVAVLKILTLGVKNVQDFDFVDAPSHSSIEMAIRNLIQLGFIKLNNNVHELTYEGRYLARMGIEPRHGKLILGCFRLALGREGIVLAAMMPNASNIFCRFGNEGDKQRSDCLKVQFCHPDGDLFTLLSVYKEWEAQPRDRKNKWCWENSINAKCMRRCQDTVLELESFLEREHGFVVPSYWRWDPHTPSVHDTNMKKVILSSLAENVAMFSGRNQLYEVAQTGQHVQLHPSSSLLVFAQRPSWVVFGELLSVSNEYLVCVSAVDFQSLYSLQPPPLFDVSKMEERKLQTKTLTGFGTILLKRFCGKGNGNMFGLASRIRKACLDERIFVEVNIDENLIQLYATSHDMNTASMMVNDVLEYEKKRLRTECMEKCLYHGSGSSSPMALFGSGAEIKHLELEKHSLSVDVCHPNVNEIDDKELLMFFEKNTSGCICAVYKFPGMVKDVEDREKWGKITFSSPDAAKRAAELDGEEFCGSSLKILPSHSVIGGDKTFSFPEVKAKIFWPRRFSKGFGIVKCDKNDVDFVLRDFYNLAIGGRYVRCALGNKSMDSIVISGLDRELPETEILDVLRTATSRRILDFFLVRGEAVGNPPCSACEESLFKEISPLIPKINPHVSSCRVQVFPPEPKDSFMRALINFDGRLHLEAAKALEKIEGKVLPGCLSWQRIKCERLFHSSLIFPAPVYHVIAEQLDKILTSFNNLNGLEWNLNRTANGSHRLKITASATKTVAEVRRPLEELSRGKVIDHDSVTPAALQLMLSRDGISLKSSIQQETRTYIIFDRQNLSLRIFGSPDRIALAQQKLIQSLLSLHEKKQLVISLRGKDLPSDLMKQVVKNFGPDLHGLKEKVPGADLELNTRQQIIFLHGKKELKPRVEEITLEIARSSHHLVERLDTGPSCSICLCEVEDGYQLEGCGHLFCRLCLVEQCESAIKNQGSFPICCAHQGCGDPILLTDFRTLLSNDKLDELFRASLGAFVASSSGTYRFCPSPDCPSVYRVADPDTASEPFVCGACYSETCTKCHLEYHPYLSCERYRELKDDPDSSLKEWCKGKEQVKSCFACGQIIEKIDGCNHVECKCGKHVCWVCLEIFTRSDDCYDHLRTIHMTI* 1737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0894 1736 Pfam Helicase conserved C-terminal domain 483 601 IPR001650 -
Mal1g0894 1736 Pfam IBR domain, a half RING-finger domain 1604 1660 IPR002867 -
Mal1g0894 1736 ProSitePatterns Zinc finger RING-type signature. 1544 1553 IPR017907 -
Mal1g0894 1736 ProSiteProfiles Zinc finger RING-type profile. 1528 1570 IPR001841 -
Mal1g0894 1736 ProSitePatterns Zinc finger C2H2 type domain signature. 1712 1733 IPR013087 -
Mal1g0894 1736 SMART ultradead3 269 455 IPR014001 -
Mal1g0894 1736 Pfam DEAD/DEAH box helicase 276 433 IPR011545 GO:0003676|GO:0005524
Mal1g0894 1736 PANTHER ATP-DEPENDENT RNA HELICASE 94 1489 - -
Mal1g0894 1736 PANTHER ATP-DEPENDENT RNA HELICASE 1561 1652 - -
Mal1g0894 1736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1525 1604 IPR013083 -
Mal1g0894 1736 Gene3D - 624 667 IPR042035 -
Mal1g0894 1736 SMART helicmild6 504 602 IPR001650 -
Mal1g0894 1736 SUPERFAMILY RING/U-box 1527 1596 - -
Mal1g0894 1736 SMART ha2_5 662 758 IPR007502 GO:0004386
Mal1g0894 1736 SMART ibrneu5 1661 1725 IPR002867 -
Mal1g0894 1736 SMART ibrneu5 1595 1660 IPR002867 -
Mal1g0894 1736 Gene3D - 257 448 IPR027417 -
Mal1g0894 1736 CDD SF2_C_RHA 450 610 - -
Mal1g0894 1736 ProSiteProfiles TRIAD supradomain profile. 1524 1732 IPR044066 -
Mal1g0894 1736 MobiDBLite consensus disorder prediction 1 55 - -
Mal1g0894 1736 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 476 642 IPR001650 -
Mal1g0894 1736 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 388 397 IPR002464 -
Mal1g0894 1736 SUPERFAMILY RING/U-box 1682 1730 - -
Mal1g0894 1736 CDD DEXHc_RHA-like 288 445 - -
Mal1g0894 1736 SUPERFAMILY RING/U-box 1610 1665 - -
Mal1g0894 1736 Pfam Helicase associated domain (HA2) 663 757 IPR007502 GO:0004386
Mal1g0894 1736 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 281 446 IPR014001 -
Mal1g0894 1736 Gene3D - 449 621 IPR027417 -
Mal1g0894 1736 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 94 1489 - -
Mal1g0894 1736 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1561 1652 - -
Mal1g0894 1736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 779 IPR027417 -
Mal1g0894 1736 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 827 902 IPR011709 -
Mal1g0894 1736 Gene3D - 1656 1734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0894 Mal-Chr1 10607148 10614044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0894 1543 1721 C3H Transcription Factor Family AT2G31770 25.543 6.25e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0894 K12818 - gmx:100810008 2629.36