Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0886 ATGGAATGGTCCCACTTGGTCTTCCTTATGGTGCTAGTATTCCATACATGCTACGCTAACGCACAACAAGGAACAACATCATATCCTCCATTTGAAGCAAAATTGTTAACTGTTGGTTGTGTTATCGGGTGTTTTGTTTCACTCTACCTCCTCTATTGCTCCGTCTACGACCATGAACCCTTCGCCGGCACCACCAATCTATTCAGCCGCACTATCATCCGTCCGGTCATCGACAAGTGCCCTATCCTCGTTTACTCCACCGTGAAAGAACTCAAAATCGGGAAAGCTACACTCGAATGCGCCATTTGCTTGAACGAGTTTGAACACTGCGACAAAATAAGGTTGCTTCCGAAATGTCAGCATGTTTTTCACACAGATTGTATTGATGGTTGGTTTTTATGTAATCTGAATTGTCCTGTTTGTCGCTGCAAACTCACAAGTGATCATGTTCCTGACATTGCAATCCCTTTAACAGAGTGTATGGTATAG 489 0.4376 MEWSHLVFLMVLVFHTCYANAQQGTTSYPPFEAKLLTVGCVIGCFVSLYLLYCSVYDHEPFAGTTNLFSRTIIRPVIDKCPILVYSTVKELKIGKATLECAICLNEFEHCDKIRLLPKCQHVFHTDCIDGWFLCNLNCPVCRCKLTSDHVPDIAIPLTECMV* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0886 162 PANTHER RING FINGER DOMAIN-CONTAINING 59 151 - -
Mal1g0886 162 SMART ring_2 100 141 IPR001841 -
Mal1g0886 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 148 IPR013083 -
Mal1g0886 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 59 151 - -
Mal1g0886 162 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Mal1g0886 162 SUPERFAMILY RING/U-box 82 148 - -
Mal1g0886 162 Pfam RING-like zinc finger 99 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0886 Mal-Chr1 10556566 10557054 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0886 6 146 Rapid Response to Elicitors AT3G05200 40.000 7.36e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0886 K10664 - csin:114255863 116.701