Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0867 ATGGGAGAAACGTTAAACCCTACTGCTCAAGAGTTTAACCCAACCAACCACATTACTCTCCCCGTCGCCGTCGGCGTTCCCTACCCCTACCCAGCTTTCGCCGTCATGCCTCCGCCGCACCTCTCCACCTTACCCACCCGCTCCCTCCTCCTCTCTCCAATCCCACCATACCCTGAATCAGACATACGTAAGGATCTTTCGACTTTCGGCGAAGTCAGAGCCGTCCAAACTGATTCCTTTCGTTACGGAATGGTAACAGTTCACTTCTATGATCTTAGACATGCTGAGACGGCGTTTGCTGCTATTCGTACCCACCATGTTCACTGTGTTGCGTTTTTTAACCCTTATTCTCATCCGCAATTCTTCACCACACAGCCGCCTCCGCCGCCGCCAGGTATCGTTGCTGGTGTTCCCCTATGGGCCAACTACGTCCTCTCTGATGCTCAGAATCAAGGAACCCTAGTCGTTTTCAACTTAAACGACGACGTTTCCGCTGATGATCTTCGACGAGTTTTCGAACCTTTTGGAGCCATAAAGGAAGTGAGGGATACACCATGGAAGAAAAGGAATCAGAGTTTTGTGGAGTTTTTTGACACAAGAGAGGCTGCGAAAGCTTTGAAAGAACTGAATGGCAAGGAGATTAATGGAAAATCAATTATCATTGAGTTTAGTAGACCAAAATTATTCAATTCAACTAATCCTAATGCTGCTTATGTTTCTAATAAGCCTTCTCGTTACAACATTAATCCACCTCCTTCACCGCGACGTCGTTTTACTCCAAACTGTCATTCCCCTCGTTCACCACAATTATCTCACAAGAGTTTTACATTTAACCGAGGAAGCCATAATAGGATTGGTTCAATGGGTTCATTGAAGTGCGAAGAGAAGTATTCTTCTTTTGTTAGAATCCAAAGTAGGGAGAGTATTGGGGAAAGTGCTTGGAGTTGGAAGGGGAAGCAAGCAAGGAAGCATGAAAATCGATTTGCAATCAAGGAAGATGCCATTGCTGAATCTGATCCTAGAACAACTCTCATGATCAAAAACATACCCAACAAATACAGTCAAAAGCTGCTATTGAACATGCTGGACAACCATTGCAAAAACTGCAACGAACAGATAAGTGACGGCGAGCCTTTATCCTCTTATGACTTTGTGTATCTCCCTATTGATTTCAAGAACAAATGCAATGTGGGATATGGGTTTGTGAATATGACATCTCCGGAGGCAATCCTAAGATTCTATAAGGCCTTCCACCACCAACATTGGGAGGTCTTTAACTCTAGAAAAATTTGCCAACTCACATACGCTAGAGTTCAGGGTTTGGAAGCTTTGAAAGAGCATTTTAAGAACTCAAAGTTCCCGTGTGAGATGGAGCATTACCTGCCGGTGGTGTTTTCACCGCCTCGAGATGGGAAACAATTAACAGAGCCAATTCCAGTAGCTGGGTACATGCTACAAGTTGGTGCTGCTCCTCCTCCTGTAGCTGATGAGATGGAGGGTCAAGATCATAGGGTAGGTAGTGGTGGCGGTGACGTGATCATCAGCAGAAAAAGTGGCGGCTTAGGTGATGATGATGATGATAAAACAGATGTGAAGTGA 1599 0.4515 MGETLNPTAQEFNPTNHITLPVAVGVPYPYPAFAVMPPPHLSTLPTRSLLLSPIPPYPESDIRKDLSTFGEVRAVQTDSFRYGMVTVHFYDLRHAETAFAAIRTHHVHCVAFFNPYSHPQFFTTQPPPPPPGIVAGVPLWANYVLSDAQNQGTLVVFNLNDDVSADDLRRVFEPFGAIKEVRDTPWKKRNQSFVEFFDTREAAKALKELNGKEINGKSIIIEFSRPKLFNSTNPNAAYVSNKPSRYNINPPPSPRRRFTPNCHSPRSPQLSHKSFTFNRGSHNRIGSMGSLKCEEKYSSFVRIQSRESIGESAWSWKGKQARKHENRFAIKEDAIAESDPRTTLMIKNIPNKYSQKLLLNMLDNHCKNCNEQISDGEPLSSYDFVYLPIDFKNKCNVGYGFVNMTSPEAILRFYKAFHHQHWEVFNSRKICQLTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKQLTEPIPVAGYMLQVGAAPPPVADEMEGQDHRVGSGGGDVIISRKSGGLGDDDDDKTDVK* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0867 532 MobiDBLite consensus disorder prediction 494 532 - -
Mal1g0867 532 MobiDBLite consensus disorder prediction 260 278 - -
Mal1g0867 532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 226 IPR000504 GO:0003723
Mal1g0867 532 SMART rrm1_1 153 222 IPR000504 GO:0003723
Mal1g0867 532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 219 IPR000504 GO:0003723
Mal1g0867 532 Gene3D - 145 238 IPR012677 -
Mal1g0867 532 SUPERFAMILY RNA-binding domain, RBD 153 421 IPR035979 GO:0003676
Mal1g0867 532 MobiDBLite consensus disorder prediction 518 532 - -
Mal1g0867 532 Gene3D - 294 443 IPR012677 -
Mal1g0867 532 PANTHER RNA BINDING PROTEIN 24 503 - -
Mal1g0867 532 SUPERFAMILY RNA-binding domain, RBD 37 105 IPR035979 GO:0003676
Mal1g0867 532 CDD RRM3_EAR1_like 341 440 IPR034458 -
Mal1g0867 532 Pfam RNA recognition motif 2 341 449 IPR007201 -
Mal1g0867 532 PANTHER TERMINAL EAR1-LIKE 1 24 503 - -
Mal1g0867 532 MobiDBLite consensus disorder prediction 234 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0867 Mal-Chr1 10324396 10326564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0867 146 270 Eukaryotic Initiation Factors Gene Family AT1G49760 32.031 1.26e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0867 - - aprc:113851312 596.66