Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0771 ATGGCTGGTAGGCTACCTGGTGTTGGATTGTCATCAAGGAAAAGATCAGAACATTATCACAATAGACATGAACATTATGCTACCTACAGAGACTCTTACCTAAAGGAATCATTGGATACACCATGGACTTCAATGAGTACTACCTTAGATGAAACTGCTTTCAAGGCCAAACAAAGGCTGCAGAAAAAACTTGGTCACTTCTTTTCGTCTTCCAGTGAACACAATCCCAAAAAAGAAGGAAAAGAAAGCAAAAGCAACTTCCAGAAGAAAGATGCAGGATTAGGTCGGAAGTTACTAGAAAGTTCATGGTTAATGCGTGGAAACAGGTTTAAGAAAGAGAGAAAAATTTGTGCTGTGTGCTTGGAAGATTTTCAGCAAGATGAAGAGGTTATGAACCTTTCTTGCTCACATAAGTATCATTCAGCATGTGTTCTTCCATGGCTTGAAGCACATCCTCATTGTCCCTATTGTAGAACCATTGTTGAGCTTTGA 492 0.3943 MAGRLPGVGLSSRKRSEHYHNRHEHYATYRDSYLKESLDTPWTSMSTTLDETAFKAKQRLQKKLGHFFSSSSEHNPKKEGKESKSNFQKKDAGLGRKLLESSWLMRGNRFKKERKICAVCLEDFQQDEEVMNLSCSHKYHSACVLPWLEAHPHCPYCRTIVEL* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0771 163 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Mal1g0771 163 Pfam Ring finger domain 116 158 IPR001841 -
Mal1g0771 163 MobiDBLite consensus disorder prediction 65 90 - -
Mal1g0771 163 SMART ring_2 117 157 IPR001841 -
Mal1g0771 163 MobiDBLite consensus disorder prediction 1 21 - -
Mal1g0771 163 CDD RING-H2_PA-TM-RING 117 158 - -
Mal1g0771 163 SUPERFAMILY RING/U-box 116 161 - -
Mal1g0771 163 MobiDBLite consensus disorder prediction 72 90 - -
Mal1g0771 163 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 36 159 - -
Mal1g0771 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 162 IPR013083 -
Mal1g0771 163 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 36 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0771 Mal-Chr1 9216237 9217356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0771 111 161 C3H Transcription Factor Family AT3G58720 43.137 2.62e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0771 - - gmx:100527548 237.269