Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0689 ATGAATGAAGCATGTGCGTTTCTAATGGAAGTAAAAGATGTGTTTCAAGACGAGATGGAAAAGTATGATGAATTTTTAGAACTTCTAAAAGATTTCAAAGCCCAAAGAATTGATAGAGGAGCTGTGAAAGAAGGAGTGAGGGAGTTGTTTAAAGAGAATCAAGATTTGATTTCCAGATTCAACATCTTCTTGCCACCAGGGCATGAAATCTCACTTCCACTAGCTGATGAACAACAACGTGATGGATCCGCGATCAAAGATAAACCCTTGTTTGGTGATGCAGTGGCGTTTATAAAGGATGTAAAAGTTGTGTTTCAAGATAAGAGGGAAAAGTTTGATAAATTTTTAAAACTCCTACATGATTTCAGTGCCAAAAGAATTAATAGAAGAGTTGCCAAAGAAGGAATGATGGAGTTGTTTAAAGAGCATCAAGATTTAATTTCAAGATTCAACATCTTCTTGCCACCAGGACATGAAATCTCACTTCCATTGGATGATGATCAACAACAAGGTGATGGATTGGCACTCAAAGATGAACAGAAAGATGATGAACTTCAAGGTAATGGATCCGCACTCAAAGATGAATCAGCATTGGCACTCAAAGATGAAAAACAAGGTGATGTATCAGTGCTCAAAGATGAACAGAAAGATGATGAACTTCAAGTTGATGGATTGGCACTCAAAGATGAACAAAAAGATGATGAAGAATAA 711 0.3657 MNEACAFLMEVKDVFQDEMEKYDEFLELLKDFKAQRIDRGAVKEGVRELFKENQDLISRFNIFLPPGHEISLPLADEQQRDGSAIKDKPLFGDAVAFIKDVKVVFQDKREKFDKFLKLLHDFSAKRINRRVAKEGMMELFKEHQDLISRFNIFLPPGHEISLPLDDDQQQGDGLALKDEQKDDELQGNGSALKDESALALKDEKQGDVSVLKDEQKDDELQVDGLALKDEQKDDEE* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0689 236 Pfam Paired amphipathic helix repeat 110 154 IPR003822 GO:0006355
Mal1g0689 236 Pfam Paired amphipathic helix repeat 20 64 IPR003822 GO:0006355
Mal1g0689 236 MobiDBLite consensus disorder prediction 203 229 - -
Mal1g0689 236 ProSiteProfiles PAH domain profile. 88 157 IPR003822 GO:0006355
Mal1g0689 236 PANTHER PROTEIN, PUTATIVE-RELATED 2 79 - -
Mal1g0689 236 PANTHER PROTEIN, PUTATIVE-RELATED 87 170 - -
Mal1g0689 236 SUPERFAMILY PAH2 domain 1 66 IPR036600 GO:0006355
Mal1g0689 236 MobiDBLite consensus disorder prediction 179 198 - -
Mal1g0689 236 MobiDBLite consensus disorder prediction 203 236 - -
Mal1g0689 236 SUPERFAMILY PAH2 domain 85 156 IPR036600 GO:0006355
Mal1g0689 236 PANTHER SIN3B-RELATED 2 79 IPR039774 GO:0003714
Mal1g0689 236 PANTHER SIN3B-RELATED 87 170 IPR039774 GO:0003714
Mal1g0689 236 Gene3D Paired amphipathic helix 93 155 IPR036600 GO:0006355
Mal1g0689 236 Gene3D Paired amphipathic helix 3 65 IPR036600 GO:0006355
Mal1g0689 236 ProSiteProfiles PAH domain profile. 1 67 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0689 Mal-Chr1 7867686 7868396 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0689 3 77 WRKY Transcription Factor Family AT4G12020 40.000 2.59e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal1g0689 PAH 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0689 K11644 - mtr:MTR_1g104960 199.904