Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0684 ATGTCGTTTGTAACAGCAGTTAAAGTTGCATTTCAAGATAAGATGGAAAAGTATGATCAATTCTTGAAACTCCAATTGGATTACAATGCCGATAGAATTGATACAAGAGTTTACAAAGAAGGAATGATGGAGTTGTTTAAAGAGCATAAAGATTTACTTATGGGACTCAACAACTGTTTGCCAGAGGGACACAAAATGTCACTTCCATTGTATAGTGATGAACAAGGTGAAGATGGATCAACGCTCAAAGATGAATCAGAACTCGCAGATAAAGCAAAGTCGTTTGTAGATGCAGTGAAAGTTGCATTTCAAGATAAGATGGAAAAGTATGATGAATTCTTGAAACTCCTAGTTGATTGCAGTGCCGATAGAATTGATAGAAGAGTTTTCAAAGAAGGAATGATGGAGTTGTTTAAAGAGCATGACGATTTACTTTTGGGACTCAACGCATGTTTGCCAGCGGAACACAAAATCTCACTTCCATTGGATGGTGATGAAGATGGATTAGAGTTGAAAGATGCACAGAAAGATGATGAACAACAAGGTGATGGATTAGAGTCCAAAGATGAACTTCAAGTTGATGAATTGGCACTCAAAGATGAACAGAAAGATGATGAACAATAA 624 0.3654 MSFVTAVKVAFQDKMEKYDQFLKLQLDYNADRIDTRVYKEGMMELFKEHKDLLMGLNNCLPEGHKMSLPLYSDEQGEDGSTLKDESELADKAKSFVDAVKVAFQDKMEKYDEFLKLLVDCSADRIDRRVFKEGMMELFKEHDDLLLGLNACLPAEHKISLPLDGDEDGLELKDAQKDDEQQGDGLESKDELQVDELALKDEQKDDEQ* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0684 207 SUPERFAMILY PAH2 domain 85 153 IPR036600 GO:0006355
Mal1g0684 207 Gene3D Paired amphipathic helix 91 153 IPR036600 GO:0006355
Mal1g0684 207 Gene3D Paired amphipathic helix 1 61 IPR036600 GO:0006355
Mal1g0684 207 PANTHER SIN3B-RELATED 1 127 IPR039774 GO:0003714
Mal1g0684 207 PANTHER SIN3B-RELATED 83 174 IPR039774 GO:0003714
Mal1g0684 207 SUPERFAMILY PAH2 domain 2 63 IPR036600 GO:0006355
Mal1g0684 207 MobiDBLite consensus disorder prediction 163 207 - -
Mal1g0684 207 ProSiteProfiles PAH domain profile. 1 63 IPR003822 GO:0006355
Mal1g0684 207 PANTHER PROTEIN, PUTATIVE-RELATED 1 127 - -
Mal1g0684 207 PANTHER PROTEIN, PUTATIVE-RELATED 83 174 - -
Mal1g0684 207 Pfam Paired amphipathic helix repeat 108 149 IPR003822 GO:0006355
Mal1g0684 207 ProSiteProfiles PAH domain profile. 82 155 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0684 Mal-Chr1 7842130 7842753 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0684 1 68 WRKY Transcription Factor Family AT4G12020 35.294 5.89e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal1g0684 PAH 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0684 K11644 - mtr:MTR_1g104960 170.244