Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0682 ATGGAGTTGTTTAAAGAGCATCAAGATTTTATTTCAAGATTCAACATCTTCTTGCCACGAGGCCGTAAATTCTCACTTCCACTAGATGATCATGAACAACAAGGTGATGAAACCGCGCTCAAAGATGATTCACCATTCAAAGATGAAGCGTTGGAGTTTTTACTAGCAGTTAAAGCTGCATTTCAAGATAAGAAGGAAAAGTATGATAAATTCTTGAAAATCCTAAAGGATTATGGTGCCAAAAGAATTGGTGTAAGAGTTGTCAAAGAAGGAATGATGGAGTTGTTTAAAGAGCATCAAGACTTTATTTCCAGATTCAACTTCTTCTTGCCACCGAGATATAAAATCTCACTTCCATTAGATGGTGATGAAAAACAAGGTGATGGATCAACACTCACAGATATTGCAAAGTCGTTTGTAAATGCAGTGAAAGTTGCATTTCAAGATAAGATGGAAAAGTATAATGAATTCTTGAAACTCCTAGTTGATCGCAATGACAATAGAATTGATTTTAGAGTTTTCAAAGAAGGAATGATGGAGTTATTTAAAGAGCATAAGGATTTACTTTTGGGACTCAACCCCTTCTTGCCAGAGGGACACAAAATCTCACTTCCATTGGATGGTGATGAACAACAAGGTGATGGATTGGCGGCATTCAAGGATGAACAGAAAGGTGATGAACAATGA 687 0.3654 MELFKEHQDFISRFNIFLPRGRKFSLPLDDHEQQGDETALKDDSPFKDEALEFLLAVKAAFQDKKEKYDKFLKILKDYGAKRIGVRVVKEGMMELFKEHQDFISRFNFFLPPRYKISLPLDGDEKQGDGSTLTDIAKSFVNAVKVAFQDKMEKYNEFLKLLVDRNDNRIDFRVFKEGMMELFKEHKDLLLGLNPFLPEGHKISLPLDGDEQQGDGLAAFKDEQKGDEQ* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0682 228 PANTHER SIN3B-RELATED 43 175 IPR039774 GO:0003714
Mal1g0682 228 ProSiteProfiles PAH domain profile. 40 113 IPR003822 GO:0006355
Mal1g0682 228 SUPERFAMILY PAH2 domain 43 112 IPR036600 GO:0006355
Mal1g0682 228 SUPERFAMILY PAH2 domain 136 199 IPR036600 GO:0006355
Mal1g0682 228 MobiDBLite consensus disorder prediction 214 228 - -
Mal1g0682 228 ProSiteProfiles PAH domain profile. 129 199 IPR003822 GO:0006355
Mal1g0682 228 Pfam Paired amphipathic helix repeat 66 110 IPR003822 GO:0006355
Mal1g0682 228 Gene3D Paired amphipathic helix 136 197 IPR036600 GO:0006355
Mal1g0682 228 Gene3D Paired amphipathic helix 49 111 IPR036600 GO:0006355
Mal1g0682 228 PANTHER SIN3B-RELATED 165 212 IPR039774 GO:0003714
Mal1g0682 228 PANTHER SIN3B-RELATED 1 83 IPR039774 GO:0003714
Mal1g0682 228 PANTHER PROTEIN, PUTATIVE-RELATED 165 212 - -
Mal1g0682 228 PANTHER PROTEIN, PUTATIVE-RELATED 43 175 - -
Mal1g0682 228 PANTHER PROTEIN, PUTATIVE-RELATED 1 83 - -
Mal1g0682 228 MobiDBLite consensus disorder prediction 206 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0682 Mal-Chr1 7835821 7836507 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0682 119 207 WRKY Transcription Factor Family AT4G12020 37.778 6.61e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal1g0682 PAH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0682 K11644 - mtr:MTR_1g104960 210.69