Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0674 ATGGCGATAGATTCAGAAGATAAGAAAGAAGAACAACACACCAAAACACTCATTTGTGCTCTCAATTTTCTCTCTCGCGACGTTCCTCTTCCTTCTCATCTCCTCAACTCCGTCTCTTCCATCTATCATCTCAACAACAACAACAACAACAACCATGCCAATGGCGATGTAGAGAGTTCCGGAGATGATTTAATAACAAATCTTGAAGATGCACTCTTGCAACAACGGACTAAATGTGCATCAGGTTTCAAATTGGAGGAAGCGATGGAAAGCCGTCATCAAAGTCAGATTCGGCATCGGTTAAATGAGCTTGAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTTTATGGACTCAAGTTAGAAGAGTTGCAGTCAAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTGAATGTGCATATCCTGACAGGAAATTGTTTGATTGGGGCATGATGAGATTGCGCCGTCCATTGTATGGAGTTGGAGATCCATTTGCCATGGATGCTGATGATCAAATAAGGAAGAAACGGGATTCTGAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAATCATATAGAGACTACAAAAAGAAGGTTTTTTGCAGAAGTACTAAATAGTGTCCGTGAGCTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGGAAACAGAGGAATGATGGCATCCAGGCATGGCATGGAAGGCAAAGACAAAGGGCAACCCGAGCAGAGAAATTGAGATTCCAAGCCTTGAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTGTGCTTCTTGAAGAAACAAATAAACTACTGGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACTTCAAACATTCAGATGGTATTGAACCCTTGGAAGATTCCGAAGCTGATATACCCGAGTCAGATGTTTCAAAGAATGGAATTCATAAGGAATCACCTGTTGATGAAGATATAGATGCGATAGATTCTGATCATAATGATGGTGACTCTAGTGATTTACTTGAAGGTCAGCGACAATACAATTCTGCCATACATTCAATTCAGGAAAAGGTAACTGAGCAACCGTCTATACTTCAAGGTGGAGAATTAAGATCATATCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAATAACTTAAATGGGATTTTGGCTGATGAAATGGGGCTTGGGAAAACGATTCAAACCATTTCTCTCATAGCACACCTTTTCGAATACAAAGGTGTGACTGGTCCACACTTGATAGTTGCTCCAAAGGCAGTTCTGCCAAACTGGATCATTGAATTCTCAACGTGGGCTCCTAGCATTAAAACTATTCTTTATGATGGACGGATGGATGAGAGAAAAGCAATAAAGGAAGAATTTTCAGGAGAGGGGAAATTTAATGTTATGATTACACATTATGATCTTATAATGAGAGACAAAGCGTTTCTCAAGAAAATTAAATGGATCTACTTAATTGTGGATGAAGGCCATCGGTTGAAGAATCATGAGTCTGTTCTTGCAAGAACCTTAGACAACAGCTATCACATCCAACGAAGACTTTTGTTGACGGGTACCCCAATTCAGAACAGTTTGCAGGAACTGTGGTCCCTGCTTAATTTTCTCCTTCCAAACATTTTCAACTCTGTTCAAAATTTCGAGGACTGGTTCAATGCCCCCTTTGCAGACCGAGTTGATGTCTCTCTATCAGATGAAGAACAACTATTAATCATTCGGCGTCTGCATCAAGTAATTAGGCCCTTCATATTAAGAAGGAAAAAAAATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAGGTTTATTATCAACAAGTTACTGACGTAGGCAGAGTTGGTTTGGACAACGGTACTGGAAAATCGAAAAGTCTACAGAACTTAACGATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAGATGTAAGGAAGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCATCGTGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACACTCTCGAAGTTTATTTAAGACTTCATGATTTCAAGTATCTTAGACTTGATGGCTCAACGAAAACTGAAGAAAGAGGCTCTCTACTACGAAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTAAGCACCCGGGCAGGCGGACTTGGTTTAAACTTACAAACAGCAGATACTGTTATAATATTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCTGAGGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTTCGGGTTTTCGTGTTGGTTAGTGTGGGGTCAGTTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGTATAGATGCCAAAGTCATTCAGGCAGGACTATTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGTGATTATGCGTCGAGGTTCAAGCTCACTTGGAGCAGATGTGCCTAGTGAAAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTATTCGAGAAAATGGACGAAGAGAGAAGACAAAAGGAAAATTACAGATCACGTCTTATGGAAGAGCATGAATTGCCAGAGTGGGTGTATGCTCCAATTAAAAAGGATGACAAGGCCAAAAATTTCAACAGTGGTGTTACTGGAAAGCGGAAAAGGAAAGACGTGGTATATGCTGATACATTGAGTGAGCTACAGTGGATGAAGGCTATGGAGAATGGGGATGATATGTCAAAGAGTTCAGCTAAAGGGAAAAGAAGAGAGTCAAGAGACTACCTCTCATCTGACAGCATAGCACAAGCCAGTGATAATACAGGGGTAGATGAAAGCTTATTACAGTCAAGGGCTAAAATTGTCCCCACGGCAAATGAAAGAACAAGTGAAGACAGTTTCCATGTTATTCCTTCCTCAAAGAGATTCAAGCCTGAAGATTCAAATTTCCAGAAACATGCACACGAGGATGTCAGCGAAAGTGGTTCGAACCAGCGTGTTTTCTCTTGGAATATTCACAAAAAGAAGAGATCAAGCCATCTTGGCCAGGGTTCGTCATCCGATAGTAGAGGGCATAATTCAAATGGAAGAGCAAACTGGAACTGA 3282 0.4119 MAIDSEDKKEEQHTKTLICALNFLSRDVPLPSHLLNSVSSIYHLNNNNNNNHANGDVESSGDDLITNLEDALLQQRTKCASGFKLEEAMESRHQSQIRHRLNELEELPSSRGEDLQTKCLLELYGLKLEELQSKVRSDVSSEYWLNVECAYPDRKLFDWGMMRLRRPLYGVGDPFAMDADDQIRKKRDSERLSRLEEVEKNHIETTKRRFFAEVLNSVRELQLQIQASLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTVLLEETNKLLVNLGAAVQRQKDFKHSDGIEPLEDSEADIPESDVSKNGIHKESPVDEDIDAIDSDHNDGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLFEYKGVTGPHLIVAPKAVLPNWIIEFSTWAPSIKTILYDGRMDERKAIKEEFSGEGKFNVMITHYDLIMRDKAFLKKIKWIYLIVDEGHRLKNHESVLARTLDNSYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYRCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEVIMRRGSSSLGADVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPEWVYAPIKKDDKAKNFNSGVTGKRKRKDVVYADTLSELQWMKAMENGDDMSKSSAKGKRRESRDYLSSDSIAQASDNTGVDESLLQSRAKIVPTANERTSEDSFHVIPSSKRFKPEDSNFQKHAHEDVSESGSNQRVFSWNIHKKKRSSHLGQGSSSDSRGHNSNGRANWN* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0674 1093 CDD SF2_C_SNF 688 821 - -
Mal1g0674 1093 MobiDBLite consensus disorder prediction 306 357 - -
Mal1g0674 1093 Pfam Snf2-ATP coupling, chromatin remodelling complex 904 963 IPR029295 GO:0042393
Mal1g0674 1093 MobiDBLite consensus disorder prediction 1074 1093 - -
Mal1g0674 1093 MobiDBLite consensus disorder prediction 971 988 - -
Mal1g0674 1093 Gene3D - 377 620 IPR038718 -
Mal1g0674 1093 SMART SnAC_2 903 963 IPR029295 GO:0042393
Mal1g0674 1093 Gene3D - 621 841 IPR027417 -
Mal1g0674 1093 Pfam SNF2-related domain 389 677 IPR000330 GO:0005524|GO:0140658
Mal1g0674 1093 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 398 564 IPR014001 -
Mal1g0674 1093 MobiDBLite consensus disorder prediction 1026 1052 - -
Mal1g0674 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 867 IPR027417 -
Mal1g0674 1093 MobiDBLite consensus disorder prediction 321 339 - -
Mal1g0674 1093 MobiDBLite consensus disorder prediction 968 1093 - -
Mal1g0674 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 611 IPR027417 -
Mal1g0674 1093 Pfam Helicase conserved C-terminal domain 697 810 IPR001650 -
Mal1g0674 1093 MobiDBLite consensus disorder prediction 989 1025 - -
Mal1g0674 1093 PANTHER ATP-DEPENDENT HELICASE BRM 8 1046 - -
Mal1g0674 1093 SMART helicmild6 726 810 IPR001650 -
Mal1g0674 1093 Coils Coil 901 921 - -
Mal1g0674 1093 SMART ultradead3 382 575 IPR014001 -
Mal1g0674 1093 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 700 861 IPR001650 -
Mal1g0674 1093 PANTHER SNF2/RAD54 HELICASE FAMILY 8 1046 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0674 Mal-Chr1 7779400 7790391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0674 693 868 RAD5 or RAD16-like Gene Family AT5G43530 34.270 5.13e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal1g0674 SNF2_N 6.2e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0674 - - gmx:100786280 1848.56