Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g0664 | ATGTTTAAGAATCAGAATTGTCACCATTCCTTTTGTTCTGAATGTGTCATCAAACAAGTGGCAACTAAAATCGAAGAGAAAATATCAGTTGTGTCTTGTCCGGGTTTGAATTGCAAGGGTGTGTTGGAACTTGAATCATGCGTGCCATTGCTTCCTAAAGAATTGATTGATAAGTGGAATGATGCATTGTGTGAATCTCTTTTTGTTACTGTTCCTAAATTCTACTGTCCATTTAAGGATTGTTCTGCTATGTTGTTGGATGAGAATGAAGGGGTGGAAGATATTAGGGAATCTGAATGTCCTTTTTGTCATAGGTTGTTTTGTGCAAGGTGTCATGTTCCGTGGCATCCTAGGGTTGATTGCGAGGAGTATCAGCAATTGAATGTGGATGAAAGAGGGAGTGATGATCTTCTTGTTAGAGAGCTTGCTAATGAGAAAAATTGGAGAAGGTGTCCCACATGCAAATTCTATGTTGAAAAGAATGGAGGTTGTTTGCATATCACTTGCAATTTTGCTATGCTTGTGGAGAACAATGGACTTCTACTCATGGTGGTTGCCAACCAAGTTAAATAG | 573 | 0.3892 | MFKNQNCHHSFCSECVIKQVATKIEEKISVVSCPGLNCKGVLELESCVPLLPKELIDKWNDALCESLFVTVPKFYCPFKDCSAMLLDENEGVEDIRESECPFCHRLFCARCHVPWHPRVDCEEYQQLNVDERGSDDLLVRELANEKNWRRCPTCKFYVEKNGGCLHITCNFAMLVENNGLLLMVVANQVK* | 191 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g0664 | 190 | SUPERFAMILY | RING/U-box | 132 | 169 | - | - | |
| Mal1g0664 | 190 | SUPERFAMILY | RING/U-box | 2 | 66 | - | - | |
| Mal1g0664 | 190 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 68 | IPR013083 | - | |
| Mal1g0664 | 190 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 1 | 173 | - | - | |
| Mal1g0664 | 190 | SUPERFAMILY | RING/U-box | 60 | 126 | - | - | |
| Mal1g0664 | 190 | Gene3D | - | 117 | 172 | - | - | |
| Mal1g0664 | 190 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 1 | 173 | IPR031127 | GO:0004842|GO:0016567 | |
| Mal1g0664 | 190 | ProSitePatterns | Zinc finger RING-type signature. | 7 | 16 | IPR017907 | - | |
| Mal1g0664 | 190 | Pfam | IBR domain, a half RING-finger domain | 74 | 121 | IPR002867 | - | |
| Mal1g0664 | 190 | SMART | ibrneu5 | 57 | 121 | IPR002867 | - | |
| Mal1g0664 | 190 | ProSiteProfiles | TRIAD supradomain profile. | 1 | 190 | IPR044066 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g0664 | Mal-Chr1 | 7663789 | 7664821 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal1g0664 | 2 | 170 | C3H Transcription Factor Family | AT2G19610 | 26.705 | 6.66e-16 | 73.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal1g0664 | K11975 | - | qsu:112001859 | 261.922 |