Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0662 ATGGAGCAACAAGCATCATCCTCATTAGTTAGCCTTGACACTGTAGACGACTTTTATTTCTCTATTGTCTCTGATGATGAAACTGACCCTGAGGTTCCTGTCTCCGATGAGAAGTACGCTGAAGCATTAGAGTTCCAAGAAACCTTAATGGCCTCTTCACTGTTCAACGAAACCCTTATGGGCTCCTCCTCCACGCCACCACCGTCATTGCTCTGCGTAGCATCTTCATCAAAGGCCGTTGATGTTGACACTGTCCTCAATATAGAGCAGATAAAGTTGGTGACCGAAGAAGCAGATGAACCGTCTACACTCACAGTTTGCGAGATTTGTGCGGAAACAAAAAGGACTGATGAAATGTTCGTGAACCAGAGATGTTACCATTCCTTTTGTTCTGAATGTGTCGTCAAACAAGTGGCTACAAAAATCCAAGACAACAAAACAAATGTGTCTTGTCCTGGTTTGAACTGCAAAGGTGTGTTGGAGCTTGAATCTTGTCGAGCATTGCTTCCAAAAGAACTTATTGATAGGTGGGATGATGCATTGTCTAAGGCTCTTTTACTTACTATTCCTAAATTCTACTGTCCCTTTAAGGATTGTTCTGCAATGTTGTTGGATGAGAATGAAGGGGGAGAAGAAGACATTAGGGAATCTGAGTGCCCTTTTTGTCATAGACTGTTTTGTGCAAGGTGTAATGTTCCTTGGCATCCTGGGGTTGGTTGTCAGGAATTTCAAACACTGAATGTGGACGAAAGAGGAAGGGAAGATCTCCTTGTTAGAGAACTAGCTAATCAGAAAAAATGGAGACGGTGTCCCAGATGCAGGTTCTATGTTGAAAGAAATGAAGGTTGTTTGCACATCACTTGCTTGTGA 870 0.4276 MEQQASSSLVSLDTVDDFYFSIVSDDETDPEVPVSDEKYAEALEFQETLMASSLFNETLMGSSSTPPPSLLCVASSSKAVDVDTVLNIEQIKLVTEEADEPSTLTVCEICAETKRTDEMFVNQRCYHSFCSECVVKQVATKIQDNKTNVSCPGLNCKGVLELESCRALLPKELIDRWDDALSKALLLTIPKFYCPFKDCSAMLLDENEGGEEDIRESECPFCHRLFCARCNVPWHPGVGCQEFQTLNVDERGREDLLVRELANQKKWRRCPRCRFYVERNEGCLHITCL* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0662 289 Pfam Zinc finger, C3HC4 type (RING finger) 107 152 IPR018957 GO:0046872
Mal1g0662 289 SUPERFAMILY RING/U-box 251 288 - -
Mal1g0662 289 Pfam IBR domain, a half RING-finger domain 190 240 IPR002867 -
Mal1g0662 289 ProSiteProfiles TRIAD supradomain profile. 103 289 IPR044066 -
Mal1g0662 289 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 31 288 - -
Mal1g0662 289 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 31 288 IPR031127 GO:0004842|GO:0016567
Mal1g0662 289 Gene3D - 238 289 - -
Mal1g0662 289 ProSiteProfiles Zinc finger RING-type profile. 107 152 IPR001841 -
Mal1g0662 289 SMART ibrneu5 175 240 IPR002867 -
Mal1g0662 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 185 IPR013083 -
Mal1g0662 289 ProSitePatterns Zinc finger RING-type signature. 125 134 IPR017907 -
Mal1g0662 289 SUPERFAMILY RING/U-box 179 245 - -
Mal1g0662 289 SUPERFAMILY RING/U-box 103 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0662 Mal-Chr1 7654703 7655659 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0662 47 288 C3H Transcription Factor Family AT2G19610 24.111 2.57e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0662 K11975 - qsu:112001859 313.153