Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0623 ATGAATATGGATAACCAAAAAAAGAAAACCACAGGGCGCAAGAAGATTGAGATCAAGAAGCTTGACAAAGAATCCAACAAACAAGTCACATTCTCAAAGAGAAGACAAGGTTTGTTCAAAAAAGCAAGTGAACTTTGTGTCTTATGTGATGTTCAACTAGCTATGATTGTGTTTTCTCCTGCTGATAAACTATTTTGCTTTGGTCAACCTAACACTGACACAATCCTCAATAGCTACATCAAAGGAACCACCAATTTTGAGGATACAAAGTCAATAGAAAAAAATTCTTCAACCTATGAAAAGTACAATAAACAATATGAGGAGGCATTAAAGATGTTAGAGTTGGAGAAGAAAAAACTAGCCGATCATGAAATTTTGGGCAAGAATTTGAAAAAAGGTGATTGGTGGAATGATTCAATTGATGATATGAGTAGTGAAGAGCTTGAACAATTTATGTTGTCCATTTATGAGTTAAGGAGCAAGCTTCTTGAAAGGGCTGATGAACTTATGATATTTGGCATGTAG 525 0.3467 MNMDNQKKKTTGRKKIEIKKLDKESNKQVTFSKRRQGLFKKASELCVLCDVQLAMIVFSPADKLFCFGQPNTDTILNSYIKGTTNFEDTKSIEKNSSTYEKYNKQYEEALKMLELEKKKLADHEILGKNLKKGDWWNDSIDDMSSEELEQFMLSIYELRSKLLERADELMIFGM* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0623 174 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Mal1g0623 174 SUPERFAMILY SRF-like 12 91 IPR036879 GO:0003677|GO:0046983
Mal1g0623 174 PANTHER MADS BOX PROTEIN 8 171 - -
Mal1g0623 174 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Mal1g0623 174 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Mal1g0623 174 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Mal1g0623 174 Gene3D - 23 120 IPR036879 GO:0003677|GO:0046983
Mal1g0623 174 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Mal1g0623 174 Coils Coil 99 123 - -
Mal1g0623 174 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 171 - -
Mal1g0623 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0623 Mal-Chr1 7169564 7170088 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0623 8 151 Type I MADS-box Gene Family AT5G60440 42.384 1.58e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g0623 SRF-TF 9.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0623 - - cam:101502875 240.736