Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0622 ATGTCAAGCGGACGAAAAAGCCGAGGTCGCCAAAAGATCGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGCAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTATGTGGTGCAGATGTTGCTCTCGTTGTATTCTCACCTGGTGAGAAGGTATTTTCATTTGGCCACCCCAATGTTGATACGGTCATAGACCGTTATCTCTCGCGGGTCCCGCCCCAAAACAATGGCACCATGCAATTCATTGAGGCTCACCGTAGTGCCAATGTGCGCGAGCTCAATGCTCAACTGACTCAGGTCAACCACCTACTGGACATTGAGAAGAAGCGTGCTGATGAGCTGAGCCATTTGCGCAAGACGACTGAGACTCAGTTTTGGTGGGCTGGTCCAATTGATGGGATGAATAGGGCCCAACTTGAATTATTCAAGAAGGCTTTGGAGGAGCTCAAGAAACTTGTTGCAGAACATGCTGATAGACTTGTGATTCAGGGTGCACCTACTCAAACCCTTCCATTTTTTGTTGGAAATGGGTCGTCCTCTAACATGCCTCTCCATCATCAACCAAATCCCCAACAAGCTCAAATGTTTCCAGCACAATTTTTTCAAAATCCTATGATGCAACCTCATTTGTTTGGCTTCAACAATATGGGAGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA 714 0.4748 MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNAQLTQVNHLLDIEKKRADELSHLRKTTETQFWWAGPIDGMNRAQLELFKKALEELKKLVAEHADRLVIQGAPTQTLPFFVGNGSSSNMPLHHQPNPQQAQMFPAQFFQNPMMQPHLFGFNNMGGGGGYGPSGFF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0622 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal1g0622 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal1g0622 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mal1g0622 237 PANTHER MADS BOX PROTEIN 7 181 - -
Mal1g0622 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mal1g0622 237 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mal1g0622 237 Coils Coil 99 119 - -
Mal1g0622 237 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 181 - -
Mal1g0622 237 Coils Coil 148 168 - -
Mal1g0622 237 MobiDBLite consensus disorder prediction 1 21 - -
Mal1g0622 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mal1g0622 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mal1g0622 237 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Mal1g0622 237 Gene3D - 88 174 - -
Mal1g0622 237 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0622 Mal-Chr1 7162311 7163024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0622 5 189 Type I MADS-box Gene Family AT5G60440 56.915 7.70e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g0622 SRF-TF 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0622 - - mtr:MTR_1g106070 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0622 1 7162311 7163024 Mal1g0622 1 7162311 7163024 ECH