Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0617 ATGTGCCATCAATGTCAAACAAATGACAAGATGAAATTCCCCCGAAACGGCGAGTCATCTAGAGTTCGTGATGATCCATATGCATTGGCGTATCTTATGGCAGTAAGCGTTGCATTTCAATATAAGAGGGTAAAGTATGATCAGTTTTTAAAACTCCTAAAAGATTTTAGAGCTTATGGAAGAATTGATAGAAGAGGTGTCAAAGCAAGAGTGAAGGAGCTGTTTAAAGGGGATACAAATTTAATTTTGGGATTCAACACCTTCTTGTCAAAGAGACATCGAATCACACTTTCATTAGGGTCATTAGGGTTTAAAGATGCATCAAAGTTTTGTAAGGCAGTAAAAGTTGCGTTTCAAGATAAGAGGGAAAATTATAATGAGTTTTTAAAAGTCCTAAAAGATTTCAAGGATCAAAAAATTTATACAAGAGGTGCCGCGGCAAGAGTGAAGGAGCTGCTTAAAGGGCATAAAGATTTAATTTTGGGATTCAACACCTTCCTGCCGAAGGAACATCAAATCACACTTCCATTTGGACTTGAAACGACTGGGAAAAAAGTGAAGAAGGTAGAAAAGAACCGTGAACTTCCTTGGGATGTGCTTGATATTATTTCCAAAACACTAGATTTTGACGACCTCTTTTAA 642 0.3692 MCHQCQTNDKMKFPRNGESSRVRDDPYALAYLMAVSVAFQYKRVKYDQFLKLLKDFRAYGRIDRRGVKARVKELFKGDTNLILGFNTFLSKRHRITLSLGSLGFKDASKFCKAVKVAFQDKRENYNEFLKVLKDFKDQKIYTRGAAARVKELLKGHKDLILGFNTFLPKEHQITLPFGLETTGKKVKKVEKNRELPWDVLDIISKTLDFDDLF* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0617 213 PANTHER SIN3B-RELATED 104 177 IPR039774 GO:0003714
Mal1g0617 213 PANTHER SIN3B-RELATED 27 142 IPR039774 GO:0003714
Mal1g0617 213 SUPERFAMILY PAH2 domain 101 169 IPR036600 GO:0006355
Mal1g0617 213 ProSiteProfiles PAH domain profile. 20 92 IPR003822 GO:0006355
Mal1g0617 213 PANTHER PROTEIN, PUTATIVE-RELATED 27 142 - -
Mal1g0617 213 ProSiteProfiles PAH domain profile. 100 170 IPR003822 GO:0006355
Mal1g0617 213 SUPERFAMILY PAH2 domain 27 90 IPR036600 GO:0006355
Mal1g0617 213 Gene3D Paired amphipathic helix 106 168 IPR036600 GO:0006355
Mal1g0617 213 Gene3D Paired amphipathic helix 28 89 IPR036600 GO:0006355
Mal1g0617 213 PANTHER PROTEIN, PUTATIVE-RELATED 104 177 - -
Mal1g0617 213 Pfam Paired amphipathic helix repeat 45 89 IPR003822 GO:0006355
Mal1g0617 213 Pfam Paired amphipathic helix repeat 123 167 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0617 Mal-Chr1 7109701 7111426 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0617 2 97 WRKY Transcription Factor Family AT4G12020 42.708 7.27e-13 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal1g0617 PAH 9.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0617 K11644 - cam:101488742 211.46