Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0597 ATGATGAAGATGCTCCGAAACGACGATGATGCATTGGAGTATATTAAGGAAGTCGAAGTTGCATTTCAACATAACACGAAAAAGTATAATGAGTTTTTAAAATTCATTAAGTATTTCCAGGTTGGAATAACTCGTATAAGTCCTGAAAAGTATGATGAGTATTTTAACATTAGCAAAGCAAGAGTGAAGAAGCTGCTTAAAGAGCATACAAATTTAATTTTGGGATTCAACACCTTTCTGCCAAAGCAACATCATATCATGCTTCCATTTCAAAAGACCAATGGAAAACAGATGAAGATGATAGAAGAGAACCGTGAGCTTCCTTGGGATGTACTTGATATCATTTCCAAAACACTAGATTTTGACGACCACTTTCAGTTTTCCGGTGTGTGCAAGAATTGGAGAGCTTTTCATGAAATATACTGGAGAAATTTTTTAGCATCCCAAGAACCATTACTTCTTCAAATTTCATGTTATCCTAAGGGATCGTTTTCCTTTATTAGCATACCCGACCTCAAAGTTTATTGCTCAAAGATGGGGAAGTACTTCTCCCGCTCTGCCTATGTTACCATTTCTAGCGGATATTTTATCATGGCGGGGTACAATAATAATACATTTATGCTAATGAATCCATTTACAAGAACAAAAAAGGTAGTCAATACCCCTACTAAATGTTCTTATTTAACCAAACGTGCCTTACTTGCTTTTGGCAAATGCTATGAGGAATTTGTGTTGGTCATTTTATGCCAATTGTGTTTGCATGTCTATCAATCTCGAAATTGTAGTTGGGTTGCTTATTCGACAATGAAAGATCAAGGGAGCATTGTTGACTTTGTGGTTTTTCAAAATATAATATATGTTGTTACTGACAAGGCCAACATAGGGGTACTCAGCTTGAATTCTGCAAATATTAAATTTCTAAAACTGAAGAGTATTCCCGATGTTTTTTGCTTTTACCCTACGTTGGTTAATTGTGATGGGCAGCTTTTAGTGGTTGATGCAATCTCCAAGAAAATAATGGATGTCTACAAGATAGACTTCTCAACAATGAATTATGTCAAGCTGGAAACTTTAGGTGGCATTGCATTATTATATGCTTCAGAGAGAAATTGTTATGCATTGAGCAACCCCAAGAGGTGGGGATATGAGAGCAACTGTGTGTATGTCATCAATTCTCCATCTACAAAATGTAGTGTGTATTCGGTTGATGATAAAAAATTGCAAAAAGAGGTTACCCTTCCAACTCCTCATGGAACGAGTTTCTTAACGTCTGACTGGTGTTTTAGACATCTACAATATGAGGTGGATTATTCTCTAGTTGAGTAA 1326 0.3597 MMKMLRNDDDALEYIKEVEVAFQHNTKKYNEFLKFIKYFQVGITRISPEKYDEYFNISKARVKKLLKEHTNLILGFNTFLPKQHHIMLPFQKTNGKQMKMIEENRELPWDVLDIISKTLDFDDHFQFSGVCKNWRAFHEIYWRNFLASQEPLLLQISCYPKGSFSFISIPDLKVYCSKMGKYFSRSAYVTISSGYFIMAGYNNNTFMLMNPFTRTKKVVNTPTKCSYLTKRALLAFGKCYEEFVLVILCQLCLHVYQSRNCSWVAYSTMKDQGSIVDFVVFQNIIYVVTDKANIGVLSLNSANIKFLKLKSIPDVFCFYPTLVNCDGQLLVVDAISKKIMDVYKIDFSTMNYVKLETLGGIALLYASERNCYALSNPKRWGYESNCVYVINSPSTKCSVYSVDDKKLQKEVTLPTPHGTSFLTSDWCFRHLQYEVDYSLVE* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0597 441 SUPERFAMILY F-box domain 106 150 IPR036047 GO:0005515
Mal1g0597 441 Pfam F-box domain 106 136 IPR001810 GO:0005515
Mal1g0597 441 ProSiteProfiles PAH domain profile. 3 83 IPR003822 GO:0006355
Mal1g0597 441 Gene3D Paired amphipathic helix 6 84 IPR036600 GO:0006355
Mal1g0597 441 PANTHER OS06G0113600 PROTEIN 98 436 - -
Mal1g0597 441 Pfam Paired amphipathic helix repeat 28 80 IPR003822 GO:0006355
Mal1g0597 441 SUPERFAMILY PAH2 domain 9 82 IPR036600 GO:0006355
Mal1g0597 441 PANTHER OS06G0113600 PROTEIN 98 436 - -
Mal1g0597 441 SUPERFAMILY Galactose oxidase, central domain 178 416 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0597 Mal-Chr1 6862031 6867800 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal1g0597 PAH 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0597 - - mtr:MTR_7g083950 489.96