Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g0588 | ATGGCTAGTTTTGCAGGAACCACACAAAAGTGCAGGGCATGCGACAAAACGGTTTATCTCGTTGATAAGCTAACCGCAGATGGTCGTATTTATCATAAGCCCTGCTTCCGGTGCCACCATTGCCGGAATACCCTCAAGAATACAAAGATACTGGCAAACGTGTTCTTAGGCACCAAAGACAAATGCATGTGTTGCAAAAAGACGGTGTATCCGACGGAGAGGGTATCGGTTAATGGGACACCCTATCATAGAGGCTGCTTCAAATGTACCTATGGAGGTTGTACTATAAGCTCATCAAACTTTGTTACACATGAGACAAAGCTCTACTGCAAACATCATCACATTCAACTTTTCAAAGAAAAGGGGAACTACAGTCAGCTTGAGAATGATGTTGCTGTTTCTGCATAA | 408 | 0.4338 | MASFAGTTQKCRACDKTVYLVDKLTADGRIYHKPCFRCHHCRNTLKNTKILANVFLGTKDKCMCCKKTVYPTERVSVNGTPYHRGCFKCTYGGCTISSSNFVTHETKLYCKHHHIQLFKEKGNYSQLENDVAVSA* | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g0588 | 135 | ProSitePatterns | LIM zinc-binding domain signature. | 11 | 45 | IPR001781 | - | |
| Mal1g0588 | 135 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 36 | - | - | |
| Mal1g0588 | 135 | Pfam | LIM domain | 11 | 49 | IPR001781 | - | |
| Mal1g0588 | 135 | Pfam | LIM domain | 62 | 117 | IPR001781 | - | |
| Mal1g0588 | 135 | Gene3D | Cysteine Rich Protein | 1 | 55 | - | - | |
| Mal1g0588 | 135 | ProSiteProfiles | LIM domain profile. | 60 | 120 | IPR001781 | - | |
| Mal1g0588 | 135 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 54 | 87 | - | - | |
| Mal1g0588 | 135 | SMART | lim_4 | 61 | 113 | IPR001781 | - | |
| Mal1g0588 | 135 | SMART | lim_4 | 10 | 60 | IPR001781 | - | |
| Mal1g0588 | 135 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 88 | 127 | - | - | |
| Mal1g0588 | 135 | PANTHER | OS06G0237300 PROTEIN | 1 | 47 | IPR045268 | GO:0051015 | |
| Mal1g0588 | 135 | PANTHER | OS06G0237300 PROTEIN | 48 | 131 | IPR045268 | GO:0051015 | |
| Mal1g0588 | 135 | Gene3D | Cysteine Rich Protein | 56 | 126 | - | - | |
| Mal1g0588 | 135 | PANTHER | LIM DOMAIN-CONTAINING PROTEIN WLIM1 | 1 | 47 | - | - | |
| Mal1g0588 | 135 | PANTHER | LIM DOMAIN-CONTAINING PROTEIN WLIM1 | 48 | 131 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g0588 | Mal-Chr1 | 6784216 | 6785391 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Mal1g0588 | LIM | 1.3e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal1g0588 | K09377 | - | gmx:100306027 | 238.81 |