Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0580 ATGGATTCTTCTGAGCAAAGCTGTGAAGAATGGAGTTCACTTAGTGGATTTTACACAGCTGAGGAAGCTGATTTTATGGGACAGTTACTTAATAACTGCCAAGTTCCTCAGCACCATTATGGAAATTTCAATTTGGAAATTCCATCTACATCATGGCCAGGACATGAATCCACAATAGTGAGCATGAATATCAGTTCACATTTTCCTCAAAATGCTGATAATAGTAGCACTGGTGTTTTTAGTTTTTTACAAAGTACCTCCATTTCTGATACTAGCAATATATTTCCTAATACAAGTGGTGGTAACATCTGTTTGAATGATCATGTAGCCAATGGCTACATTGGCTACATGAATGCCAATTTTAACACTTATAGTGTTCAAGGTAATGATAGCCAACAAATACCTGAAAACAATTCTGAAGAGTTTGGTCAAGATGTTTCGGAATCAGTGAAAGAGGGTATCAACAACAACCTGGAAAAGTCAGGAAAAAGATCTAGGAGCTCAATGAAGGTACCAAAGAACAAGAGAAATGTGAAATCTAGGAAGAAACCAAAGTCGGCGTTCAAAAGCAACACTGAAGAAGATGCAAGTCCTGATCTTCAGGAGCAGAACTTGAGCTCAGAGGATGATGATTTCAATGCTTCACAGAAGCTAAATGCAGGAACATCTTCAATCTTGAACCAGAATGATTCAACAGATTTGAAGTTAAAGGGAAAATCAATATGTAATGGAGGTTCTGCCTCTGATCCACAAGGTGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATCCTACAAAGCCTAGTCCCTAATGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTACAGGTCCAAATTAAGCTTCTGAGCTCTGATGATCATTGGATGTATGCTCCCATTGCTTACAATGGAATGAACATTGGATTAAACCTCAACATTTTCCCAACCGAACTACCATAG 999 0.3804 MDSSEQSCEEWSSLSGFYTAEEADFMGQLLNNCQVPQHHYGNFNLEIPSTSWPGHESTIVSMNISSHFPQNADNSSTGVFSFLQSTSISDTSNIFPNTSGGNICLNDHVANGYIGYMNANFNTYSVQGNDSQQIPENNSEEFGQDVSESVKEGINNNLEKSGKRSRSSMKVPKNKRNVKSRKKPKSAFKSNTEEDASPDLQEQNLSSEDDDFNASQKLNAGTSSILNQNDSTDLKLKGKSICNGGSASDPQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQVQIKLLSSDDHWMYAPIAYNGMNIGLNLNIFPTELP* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0580 332 PANTHER TRANSCRIPTION FACTOR BHLH54 8 327 - -
Mal1g0580 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 246 295 IPR011598 GO:0046983
Mal1g0580 332 SMART finulus 252 301 IPR011598 GO:0046983
Mal1g0580 332 MobiDBLite consensus disorder prediction 167 185 - -
Mal1g0580 332 MobiDBLite consensus disorder prediction 197 230 - -
Mal1g0580 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 312 IPR036638 GO:0046983
Mal1g0580 332 CDD bHLH_AtIND_like 247 309 - -
Mal1g0580 332 MobiDBLite consensus disorder prediction 128 147 - -
Mal1g0580 332 MobiDBLite consensus disorder prediction 155 230 - -
Mal1g0580 332 Gene3D - 254 307 IPR036638 GO:0046983
Mal1g0580 332 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 327 - -
Mal1g0580 332 Pfam Helix-loop-helix DNA-binding domain 256 296 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0580 Mal-Chr1 6697492 6699059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0580 10 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 37.709 4.07e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal1g0580 HLH 4.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0580 - - gmx:100817334 404.831