Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0578 ATGGAACCTGCCCAATTGATTTCTGAAGAATGGGATTCTCTTAGTGGACAGTACACAATTGAGGAAGCTGACTTCATGAATCAGTTCCTTGGTGGTAATGGAAATATCAATTTTGGCATGCCATCTTATTTTCCTTCAAATGTTTCAAATGCTAATGTTTTGTGTTTCCCAGAAGGGAGTAGCACAAGTACTGATAATAGTGCTAATATCTTTTCCAACACAAGTAGTGGAACCTATTCATGTGATTTGGCAACAAACATTGATTCCTTGTCCATGTTTTTTTCCTTGGGTGATGCCAAATTTAGTCCACAATATTTGGATCATACCTTAACCAAAAAGATAAACTATGAAAGCATTAATCATGAAGGGTCAGGTTTAGTTCTTGTTGACAACAATTTGTGGGATGAGAGGGAGCATGAAATGATGATGAGTTCTGAACCTACTTCAGAAGAGGATAGAAGCAAAAACTTGGAAAAACCTGCAAAAAGATTTAGGAGCTCAATAGAGGTCTCAGAAAACATGAGGAATGTTAGGAAATGTCCAAAATTTGCTTCTATGAGCCACAATGAAGAGGGCCTAACATGGCATGGCTCCAACAATTGTTTTTCACAGGTTGACTCTAATCCTTCTCTGGAGCAAATTGGAGGAACACCTTCAATTCTAAGCCCAAAAGAAGCTGAAGCACCTAAGTTATGTAGAAAATCAAAGGCAGGTAGAGGTCCTGCCACTGATGCTCAGAGCATTTATGCAAGAAGGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCTTGCAAACCCTTGTCCCAAATGGAACTAAGGTGGATATTAGTACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTTCAAATTAAGCTTTTGAGCTCTGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATAAATATTGGATTAGACCTCAGCTTCTCTTCTCCAACTAATTAA 981 0.3823 MEPAQLISEEWDSLSGQYTIEEADFMNQFLGGNGNINFGMPSYFPSNVSNANVLCFPEGSSTSTDNSANIFSNTSSGTYSCDLATNIDSLSMFFSLGDAKFSPQYLDHTLTKKINYESINHEGSGLVLVDNNLWDEREHEMMMSSEPTSEEDRSKNLEKPAKRFRSSIEVSENMRNVRKCPKFASMSHNEEGLTWHGSNNCFSQVDSNPSLEQIGGTPSILSPKEAEAPKLCRKSKAGRGPATDAQSIYARRRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSEDMWMYAPIAYNGINIGLDLSFSSPTN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0578 326 Gene3D - 243 307 IPR036638 GO:0046983
Mal1g0578 326 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 322 - -
Mal1g0578 326 Pfam Helix-loop-helix DNA-binding domain 251 291 IPR011598 GO:0046983
Mal1g0578 326 SMART finulus 247 296 IPR011598 GO:0046983
Mal1g0578 326 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 45 322 - -
Mal1g0578 326 MobiDBLite consensus disorder prediction 142 165 - -
Mal1g0578 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 308 IPR036638 GO:0046983
Mal1g0578 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 241 290 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0578 Mal-Chr1 6658372 6660031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0578 10 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 37.006 1.55e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal1g0578 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0578 - - gmx:100816788 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0518 6 6620549 6621974 Mal1g0578 1 6658372 6660031 PCT