Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0566 ATGAGTTGCAACGGTTGCAGAGTGTTGAGAAAGGGATGCAGTGAGGATTGCATGCTACGAGATTGTCTAACATGGATACAAAACCCACAAGCACAGGCTAACGCTACTGTCTTTGTCACCAAGTTCTTCGGTCGTGCCACCCTCATGTCTTTCCTTTCCTCTGTTCCTCCCAACCAAAGATCATGTTTGTTCCAGTCACTTATGTATGAAGCTGTTGGACGAACTATAAATCCAGTGAATGGAGCAGTTGGGCTGTTATGGACTGGAAAGTGGCAACTCTGTCAACTTGGTGTGGAGCAAGTGCTGAAAGGTAACGGCGGCGCGTTGATGCCACTTCCTGATCAGTTGTTGGGTGTGGATCATGAAGAAGCAGAATCTGGGTTGATGTCACATAGAGTGGTGGGAAGGTGCCACCAAGCAAAAAAGCAACGTGTGGAGAAACATGAATCTGAGGAATCGGAGTCGTCGACGTTGGGAAGTAGAACAGGAACAGAAGATTGTTCTTATGTTTATGCTAATTCTCAAACTCAAAGGAACCAGCTCCTTACACTATTCTTATGA 561 0.4599 MSCNGCRVLRKGCSEDCMLRDCLTWIQNPQAQANATVFVTKFFGRATLMSFLSSVPPNQRSCLFQSLMYEAVGRTINPVNGAVGLLWTGKWQLCQLGVEQVLKGNGGALMPLPDQLLGVDHEEAESGLMSHRVVGRCHQAKKQRVEKHESEESESSTLGSRTGTEDCSYVYANSQTQRNQLLTLFL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0566 186 PANTHER LOB DOMAIN PROTEIN 1 186 - -
Mal1g0566 186 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Mal1g0566 186 MobiDBLite consensus disorder prediction 141 155 - -
Mal1g0566 186 MobiDBLite consensus disorder prediction 141 162 - -
Mal1g0566 186 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Mal1g0566 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0566 Mal-Chr1 6447777 6448526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0566 1 118 AS2 family AT3G49940 68.644 2.99e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal1g0566 LOB 3.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0566 - - mtr:MTR_1g106420 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0566 1 6447777 6448526 Mal1g0566 1 6447777 6448526 ECH
Mal6g1385 6 24829197 24830058 Mal1g0566 1 6447777 6448526 PCT