Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g0550 | ATGACGAGCGCTTCAGAACTATTCCACATCAGGAGACACCGATTAGGACGAAATGATCTCGATTCAGCTTTCCACTCCTCACCTTCTCCAGATTTCCATCACCACCACCGCCTTCACGACTCCGACGATGATGATTCTCCCCGTATCCGCCGCCACTACAACGTCCGCCGCCTCCGTCACCACGAGCGTGCATCGGATAGATTTGTTGGAAGGTATCGTCGGTCTCAATTAAATGAAGGTGTTGATTCTGGAGAAAGTGTGAGAGGTAGTCCAAGAGCAAGTGCAAGTGATAGATTACCTGTAGATGTGAGACTTGCACGAGAAAGACTCCTTCAGAGGTTGAGAGGGGTGCCTGCAGATATAAACAGGCAATATGATAGAGATTCAATGGACGAAGATCAAGAAAGTGAATTATCAAGTGAAGTTCCAACTGAGGACTCTTTAGTTACTGACTTGACTTCTCAACTGGCAAGGATCCAGCTCTTGCAAGAACGGTCCAAAAAGCCACCGGGACTCACTCAGGAGGCCCTTGACTGTTTGCATATTGAAGTTTTTAGCAGCAGTAATACAGAATCCGAGTCCAGGGTACCGCAGGATTGTGGGATATGCTTGGAATCTTTCACGGATGGAGATAAACTGATCCATTTACAATGTGGACATAAATTTCACTCTGCTTGTTTGGATCCTTGGATTCGCAGTTGTGGAGATTGTCCATACTGTCGAAGATGTATAGTTGTAAATAGTCACCTTCCATAG | 756 | 0.4616 | MTSASELFHIRRHRLGRNDLDSAFHSSPSPDFHHHHRLHDSDDDDSPRIRRHYNVRRLRHHERASDRFVGRYRRSQLNEGVDSGESVRGSPRASASDRLPVDVRLARERLLQRLRGVPADINRQYDRDSMDEDQESELSSEVPTEDSLVTDLTSQLARIQLLQERSKKPPGLTQEALDCLHIEVFSSSNTESESRVPQDCGICLESFTDGDKLIHLQCGHKFHSACLDPWIRSCGDCPYCRRCIVVNSHLP* | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g0550 | 251 | MobiDBLite | consensus disorder prediction | 78 | 99 | - | - | |
| Mal1g0550 | 251 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED | 1 | 246 | - | - | |
| Mal1g0550 | 251 | PANTHER | SI:CH211-59O9.10 | 1 | 246 | - | - | |
| Mal1g0550 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 245 | IPR013083 | - | |
| Mal1g0550 | 251 | MobiDBLite | consensus disorder prediction | 20 | 48 | - | - | |
| Mal1g0550 | 251 | CDD | RING-H2_PA-TM-RING | 199 | 241 | - | - | |
| Mal1g0550 | 251 | SUPERFAMILY | RING/U-box | 199 | 246 | - | - | |
| Mal1g0550 | 251 | MobiDBLite | consensus disorder prediction | 122 | 147 | - | - | |
| Mal1g0550 | 251 | ProSiteProfiles | Zinc finger RING-type profile. | 200 | 241 | IPR001841 | - | |
| Mal1g0550 | 251 | SMART | ring_2 | 200 | 240 | IPR001841 | - | |
| Mal1g0550 | 251 | MobiDBLite | consensus disorder prediction | 28 | 48 | - | - | |
| Mal1g0550 | 251 | Pfam | Ring finger domain | 199 | 241 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g0550 | Mal-Chr1 | 6302934 | 6305264 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal1g0550 | 1 | 245 | C3H Transcription Factor Family | AT1G49850 | 42.636 | 2.48e-44 | 148 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal1g0550 | - | - | gmx:100814695 | 307.76 |