Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0540 ATGAAGATCGCCGGAAACCGCGATGACGCATTGGCATATCTTAAAGCAGTAAAAGCTGCGTTTCAATATAACAGGAAAAAATATGATCAGTTGTTAAAACTCCTACTAGATTTCAGGGATGGAAAGATTGATATAAGAGGTGTCAAAGCAAGAGTGAAGGGGTTGTTTAAAGGGCATACTGATTTAATTTTCGGATTCAACACCTTCCTACCAAAGGAACATCAAATCACACTTCCATTAGGGTTTAAAGTTGCAACAGCATTTCTTCAAGCAGTAGAAGCTGCGTTTCAACATAACAGGATAAAGTATGATCAGTTTTTCAAAGTTATGAGGGATTTCAAGGATCAAAGAATTGATACAAGAGGTGCCGTGACAAGAGTGAAGGAGCTGCTTAAAGGGCATTCAGATTTGATTTTGAGATTCAACACCTTCCTCCCAAAGGAACATCAAATCACACTTCCATTTCAACTTGAGACCACCGGTTTAAAGGTTAGCTTTGATCAAGTGCAAATTCACTCAATGACTTTGGCGTCGCTAACGTTTCAGATCTGA 552 0.3895 MKIAGNRDDALAYLKAVKAAFQYNRKKYDQLLKLLLDFRDGKIDIRGVKARVKGLFKGHTDLIFGFNTFLPKEHQITLPLGFKVATAFLQAVEAAFQHNRIKYDQFFKVMRDFKDQRIDTRGAVTRVKELLKGHSDLILRFNTFLPKEHQITLPFQLETTGLKVSFDQVQIHSMTLASLTFQI* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0540 183 SUPERFAMILY PAH2 domain 78 147 IPR036600 GO:0006355
Mal1g0540 183 Pfam Paired amphipathic helix repeat 102 145 IPR003822 GO:0006355
Mal1g0540 183 Pfam Paired amphipathic helix repeat 27 70 IPR003822 GO:0006355
Mal1g0540 183 ProSiteProfiles PAH domain profile. 1 73 IPR003822 GO:0006355
Mal1g0540 183 SUPERFAMILY PAH2 domain 7 72 IPR036600 GO:0006355
Mal1g0540 183 Gene3D Paired amphipathic helix 9 71 IPR036600 GO:0006355
Mal1g0540 183 Gene3D Paired amphipathic helix 85 146 IPR036600 GO:0006355
Mal1g0540 183 ProSiteProfiles PAH domain profile. 78 148 IPR003822 GO:0006355
Mal1g0540 183 PANTHER SIN3B-RELATED 82 157 IPR039774 GO:0003714
Mal1g0540 183 PANTHER PROTEIN, PUTATIVE-RELATED 82 157 - -
Mal1g0540 183 PANTHER PROTEIN, PUTATIVE-RELATED 7 100 - -
Mal1g0540 183 PANTHER SIN3B-RELATED 7 100 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0540 Mal-Chr1 6205134 6211536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0540 9 97 WRKY Transcription Factor Family AT4G12020 48.315 8.51e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal1g0540 PAH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0540 K11644 - cam:101488742 160.999