Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0538 ATGATTAGTTCAACTGGAAATTCAACAATCCCTAACAATTTTAGGACTGAGAAGATGGGAACTGAACAACGTGATTTGTCTGAAAAAACAGCTCATATTGGCTCTGAATGTTTAGGCAACGAACAAAGTGTGCTTGGTACTGTGGTAACAAATTCTGTTATCGATGAAAAATCAAATCAAGTTTCGGTGAATATGACTGACAATCCTGTTATTCAACCGCCTGGAGAAATGAGTGATGCAGTAACTGCCCTTGTTGAAGAACAACCACAACCTGTTCCTGTTCAAGTGAACTCAAATTCTGTGAATGAGCTATTGGATCCACCTTCTGGAGAAATTGCGAAAAATATTAGTTCTCAAAACGAACCTGGTGAAACGAATGATGCAGTAACTGGCCTTGTTGAAGACCAAACACAATCCGTTCCTGCTCAAGTGAAAACAGATTCTGTGAATGAGCTACTCGATATGCCTTCTGGAGATGCTGCGAAAACTATTAATTCTGATTGTTCAGAAAGAAAGTCTAAAACCTCGGTTCATATGCGAGTGAAACATGGGGCTAAAAAAAACTCGAAATTATCGAAGAAGTATATATTAAGGTCGTTAGGAAGCAGCGACAGAGCTCTGCGGTCAAGAGATAATAAACCTAAAGCTCCTGAACCAATTAATACTGTTGCTGATGTTAATAATGATGAAATGAAGACAAAAGAAAGGAAGAAGAAGAAGAAGAAAAAGACAAGAAAAGAAGGAATTAATGATCAATTTTCTAAAATCAGAGCTCAATTGAGATATTACTTGAACCGAATAAACTACGAGCAAAGCTTTATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATCCAGTATGGAGAAATTAAAGCCAGAGAAGGAGATTCAACGAGCCAAGTCCCAAATTCTGCGACGTAAATTAAATATCAGGGATCTATTTCAAAATTTGGATTCATTGTGTGCTGAAGGAAGGCTTCCTGAATCTTTGTTTGATTCCGAGGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGCCAGACCAAAGTGTTGGGCACTAATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATATCACCAGCTCTGTTTGGATCCTCCACTGTTAACTGAAGACATTCCACCTGGCGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATTGAACTTGTTAATGACTTGTTAGGGACAAGTCTCTCTCTTACTGACACCTGGGAGAGTGTTTTTCCTGAAGCAGCTACAGCTGCTAGAAGTATCTTGGATCACAACTTGGGACTTCCTTCAGATGATTCTGACGATGATGATTATAATCCTGATAAACCAGAGGATGTGAAGGTTGAAGGAGGTGAATCAAGTTCTAACGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGATTCACATCATGAGGATCAATACATGGGTCTTCCTTCTGAAGATTCAGAGGATGATGATTTTGATCCTAATGCTCCCAATCTCGGTGCAAAAGACACTGAAGAAAGTTCAAGTTCTGATTTCATATCTGATTCTGAGGATCTTGCTGCTACAATTAAGGATAACATGTCCATTGGACAAGATGCTGATGTCACATCTACACCGCTGGATGTTAAGAATTTCAAAGGTTCTAGCAAACAAAACCGTAAGAAGCCATCTATAACTGATGAACTGTCATCTTTAGTAGAGCCAGATCTCGGCGAAGAGGATTTGACTCCAGTTTCTGGGAAAAGAAATGTGGAAAGGTTGGACTACCAAAAGCTGTATGAAGAGACATACCATAGTGATACTAGCGATGATGAAGATTGGGCTGACACTGCTACTCCAAGTAGAAAAAAGAAATTCACTGCCAAAATGAATCCAGTGTCACCAAATGGAAATGCCTCAAATAATTCCAGACATACTGCTAAGCGGAACACCCATCAGCGTAAAGTTGAAAATACAAATAATTCACCCACCAAAACACTTGAAGCATGCACGGAATCTGGTTCCAGGGATAAAAGACGTGGATCTTCATACAAAAAACTTGGAGAAGCTGTTGTTCAGAGACTTCACAAATCTTTCAAAGAAAATCAATATCCAGAACGAACTACAAAAGAAAGCTTGGCGCAAGAACTGGGACTCACTTTTCAACAGGTTGACAAATGGTTTGGCAATACTCGTTGGAGCTTCCGACATTCATCGCATAAGGAGGCCAGTCCAGGCAGTAATGCTTCACAGCAGGCCACTGACAGCGGAGCTGAAAATAAAGGAGATAGGGGTAATGCTTCACAGCAGGCCACTGACAGCGGAGCTGAAAATAAAGGAGATGTGGGCAATGCTTCGCAGCAGGCCACTGACAGCGGAGCTGAAAATAAAGGAGATATGGGTAATGCTTCGCAGCAGGCCATTGACAGTGGAGCTGAAAACAAAGGAGAGAAGGAACATCAACTAGTTTCCCAGGAGACTAGTGGAGAAAAGTCGAGAACCCCAAGCTCTAGGAAAAGGAAGCGTTTGTCTGAGCCGCAGGCATCTGAAGCAGGGCTGGTCCATAACGGCTCAACCCCCGACTGCTCACCGATAGCTGATACAGGCAATAAAATGAAGAAAAAGAAAGGAAAATGA 2643 0.4139 MISSTGNSTIPNNFRTEKMGTEQRDLSEKTAHIGSECLGNEQSVLGTVVTNSVIDEKSNQVSVNMTDNPVIQPPGEMSDAVTALVEEQPQPVPVQVNSNSVNELLDPPSGEIAKNISSQNEPGETNDAVTGLVEDQTQSVPAQVKTDSVNELLDMPSGDAAKTINSDCSERKSKTSVHMRVKHGAKKNSKLSKKYILRSLGSSDRALRSRDNKPKAPEPINTVADVNNDEMKTKERKKKKKKKTRKEGINDQFSKIRAQLRYYLNRINYEQSFIDAYSGEGWKGSSMEKLKPEKEIQRAKSQILRRKLNIRDLFQNLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCQTKVLGTNNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCIELVNDLLGTSLSLTDTWESVFPEAATAARSILDHNLGLPSDDSDDDDYNPDKPEDVKVEGGESSSNESEYASASEKLEDSHHEDQYMGLPSEDSEDDDFDPNAPNLGAKDTEESSSSDFISDSEDLAATIKDNMSIGQDADVTSTPLDVKNFKGSSKQNRKKPSITDELSSLVEPDLGEEDLTPVSGKRNVERLDYQKLYEETYHSDTSDDEDWADTATPSRKKKFTAKMNPVSPNGNASNNSRHTAKRNTHQRKVENTNNSPTKTLEACTESGSRDKRRGSSYKKLGEAVVQRLHKSFKENQYPERTTKESLAQELGLTFQQVDKWFGNTRWSFRHSSHKEASPGSNASQQATDSGAENKGDRGNASQQATDSGAENKGDVGNASQQATDSGAENKGDMGNASQQAIDSGAENKGEKEHQLVSQETSGEKSRTPSSRKRKRLSEPQASEAGLVHNGSTPDCSPIADTGNKMKKKKGK* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0538 880 MobiDBLite consensus disorder prediction 633 648 - -
Mal1g0538 880 SUPERFAMILY FYVE/PHD zinc finger 333 401 IPR011011 -
Mal1g0538 880 ProSiteProfiles 'Homeobox' domain profile. 680 740 IPR001356 GO:0003677
Mal1g0538 880 MobiDBLite consensus disorder prediction 153 249 - -
Mal1g0538 880 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 139 840 - -
Mal1g0538 880 MobiDBLite consensus disorder prediction 583 625 - -
Mal1g0538 880 MobiDBLite consensus disorder prediction 176 193 - -
Mal1g0538 880 Pfam Homeodomain 693 736 IPR001356 GO:0003677
Mal1g0538 880 PANTHER HOMEOBOX PROTEIN HAT3.1 139 840 - -
Mal1g0538 880 MobiDBLite consensus disorder prediction 1 26 - -
Mal1g0538 880 MobiDBLite consensus disorder prediction 739 813 - -
Mal1g0538 880 MobiDBLite consensus disorder prediction 1 17 - -
Mal1g0538 880 Gene3D - 682 752 - -
Mal1g0538 880 MobiDBLite consensus disorder prediction 814 828 - -
Mal1g0538 880 SMART HOX_1 678 744 IPR001356 GO:0003677
Mal1g0538 880 MobiDBLite consensus disorder prediction 853 867 - -
Mal1g0538 880 MobiDBLite consensus disorder prediction 739 880 - -
Mal1g0538 880 MobiDBLite consensus disorder prediction 673 690 - -
Mal1g0538 880 Pfam PHD-finger 343 398 IPR019787 -
Mal1g0538 880 CDD homeodomain 680 741 IPR001356 GO:0003677
Mal1g0538 880 ProSitePatterns Zinc finger PHD-type signature. 344 395 IPR019786 -
Mal1g0538 880 ProSiteProfiles Zinc finger PHD-type profile. 341 398 IPR019787 -
Mal1g0538 880 MobiDBLite consensus disorder prediction 658 672 - -
Mal1g0538 880 MobiDBLite consensus disorder prediction 538 555 - -
Mal1g0538 880 MobiDBLite consensus disorder prediction 437 690 - -
Mal1g0538 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 406 IPR013083 -
Mal1g0538 880 MobiDBLite consensus disorder prediction 474 491 - -
Mal1g0538 880 CDD PHD_PRHA_like 343 395 IPR045876 -
Mal1g0538 880 SMART PHD_3 343 396 IPR001965 -
Mal1g0538 880 SUPERFAMILY Homeodomain-like 679 741 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0538 Mal-Chr1 6185618 6191239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0538 239 737 Homeobox Transcription Factor Family AT3G19510 47.348 7.40e-128 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Mal1g0538 PHD 4e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0538 - - cam:101500744 1128.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0538 1 6185618 6191239 Mal1g0538 1 6185618 6191239 ECH