Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0509 ATGAAGATCCCCCAAAATCGCGATGATGCATTGGCAGCTTTTCAGAAGGCAGTACAAGCTGCGTTTCAAGATAGGAAGGGAAATTATTATAATGAGCTATTAAAAGTCCTAAAAGATCAAATAATTTATACAAGAGGTGTTGCGTCAAGAGTGAAGGAGCTGCTTAAAGGGCATCCAGATTTAATTTTGAGATTCAACACCTACCTGCCAAAGGAACATCAAATCAAACTTCAATTTCAACTTGAGACCACTGGGAAAAAGGTGAAGAAGTTAGAAGAGAACGGTGAACTTCCCTGGGATGTGCTTGATATCATTTCCCAAACACTAGATTTTGATGAACTTTTTCAGTTTGCCGGTGTGTGCAAGAATTGGAGGGATTTTCATAAAATTCACCGGAGAAATTTCTTGGCATCCCAAGAACCATTAATTCTTCAAGTTTCTTATGATGATATTGGATCACTTTCCTTTATCAGCATACCCGACCAAAAAGTTTATTATCGCTTGAACATAGATGAGTGCTATTGGGAATATACCTACGCTACGTCTTCTAGCGGATATTTTATCTCGGTGGGGAGAAATAATTCAGTTTTGCTACTCAATCCATTTACAAGAATAAAGAAGGTAATCAATACATGTCCCTCTGAAGTTGAGTCTTGTATTAATATTAACCGTGCCCTGCTTGCTTTTGGCAAATGCTCTGAGGAATTTGTCTTAATGGTTTTTTGCAATTTTCCTGAGAGTTTGCATGTCTATCAATCTCGAAATTGTGGTTGGGTTACTTATTCGACAACAGGAAATCAAGGAAGGATTGCTGACGTTGTGGTTGTGCATAATATAATATATGTTGTCACTACCAAGGCCAACATAGGGGTACTTAGCTTGAATTCTGCAAAAATTAAATTTCTAACACTAAAGAATGCTCCCAATGAAATATTTCCCTTAACCCTTAGGTTTGTTAATTGTGATGAGCAACTTGTAGTGCTTTATTTAAGGTCCAATGAAATAAGGGATGTGTACAAGATAGACTTCTCAACCATGAGTTATGTCAAATTGGAAACTTTAGGTGACATTGCATTATTTCATGCTGTGTACAGAAATTCTTATGCATTGAGCAACCCGAATAAGTGGGGATATGAGAGCAACTCTGTGTATGCATTGAACCATATTAAATGTGCAGAATGTAGTGTGTATTCCGGGGATGATAAAAAATTGAAAAAATGCATTGTGCTTCCAGCTCATGGACCATATTCCTACATGTTTGATTGGTGTTTTAGACATATACAATATGAGGTAGATTATTCTCTAGTAGGGTGA 1314 0.3699 MKIPQNRDDALAAFQKAVQAAFQDRKGNYYNELLKVLKDQIIYTRGVASRVKELLKGHPDLILRFNTYLPKEHQIKLQFQLETTGKKVKKLEENGELPWDVLDIISQTLDFDELFQFAGVCKNWRDFHKIHRRNFLASQEPLILQVSYDDIGSLSFISIPDQKVYYRLNIDECYWEYTYATSSSGYFISVGRNNSVLLLNPFTRIKKVINTCPSEVESCININRALLAFGKCSEEFVLMVFCNFPESLHVYQSRNCGWVTYSTTGNQGRIADVVVVHNIIYVVTTKANIGVLSLNSAKIKFLTLKNAPNEIFPLTLRFVNCDEQLVVLYLRSNEIRDVYKIDFSTMSYVKLETLGDIALFHAVYRNSYALSNPNKWGYESNSVYALNHIKCAECSVYSGDDKKLKKCIVLPAHGPYSYMFDWCFRHIQYEVDYSLVG* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0509 437 SUPERFAMILY F-box domain 96 127 IPR036047 GO:0005515
Mal1g0509 437 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 146 422 IPR011048 -
Mal1g0509 437 Pfam F-box domain 96 126 IPR001810 GO:0005515
Mal1g0509 437 Pfam Paired amphipathic helix repeat 32 69 IPR003822 GO:0006355
Mal1g0509 437 SUPERFAMILY PAH2 domain 12 71 IPR036600 GO:0006355
Mal1g0509 437 ProSiteProfiles PAH domain profile. 3 72 IPR003822 GO:0006355
Mal1g0509 437 PANTHER OS06G0113600 PROTEIN 88 432 - -
Mal1g0509 437 Gene3D Paired amphipathic helix 9 70 IPR036600 GO:0006355
Mal1g0509 437 PANTHER OS06G0113600 PROTEIN 88 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0509 Mal-Chr1 5835524 5838663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0509 9 77 WRKY Transcription Factor Family AT4G12020 48.611 2.80e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal1g0509 F-box 5.6e-05 CL0271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0509 - - cam:101488742 474.167