Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0461 ATGGGGGATCACTTTGATTTACTCGTTGATCGGTTGCTCACTGAATCGACATTAGAAGCTGCCATTGAAAGCAGAAAGCGGGCGATGCAGGCTGCATCCTCGGCGGTGAATGACGCAGAAGTCGATCACTCTTTGTTGAAGATGGGTGTCAAATGTTCAGGGAAGCTGGCAGAATGCAGGATATGTCATGATGATGATGATGATTCCAATATGGAGACACCGTGCTCCTGTTGTGGTAGTTTGAAGTACGCACACCGAAGATGCATACAACGGTGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATGCCATCAGCCATTCAAGCCTGGTTACACAGCTCCTCCTCCGCTATTTCAGTTTGGGCGCATTCCAATGAGTTTCAGGGGAAATTGGGAAATTTCGCGAAGAGATTTAAATAGTACTCATTTAGTTAGCATGGTTCCCACTGACCAGAACCTTATCAATTCTAACTATGATCAATATTCAGCCTCTTCTTCAGGAAGTTTGATATGCTGTCGTTCGGCTGCTGTCATTTTCATGGTTCTGCTGATTTTAAGACATACACTTCCCCTCTTAATTAGTGGAAATAAAGACCATTCTTTCCCACTTTTCGTGGTGTTATTATTTCGGAGTGCTGGTATTGTCGTACCTATATACTTCATGGTTAGAGCAGTGGCACTAATCCAGCGACATCGGAGACAACATCGAGAGCATCCTAGTGCCTTGGTCAGTTCATCTGATGATGAAGTCGAGGAAGCAGGTTTGCAGTCTCAACCTCATATCATACATTTAGTGTAA 801 0.4444 MGDHFDLLVDRLLTESTLEAAIESRKRAMQAASSAVNDAEVDHSLLKMGVKCSGKLAECRICHDDDDDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQPFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNLINSNYDQYSASSSGSLICCRSAAVIFMVLLILRHTLPLLISGNKDHSFPLFVVLLFRSAGIVVPIYFMVRAVALIQRHRRQHREHPSALVSSSDDEVEEAGLQSQPHIIHLV* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0461 266 Pfam RING-variant domain 59 104 IPR011016 GO:0008270
Mal1g0461 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 114 IPR013083 -
Mal1g0461 266 ProSiteProfiles Zinc finger RING-CH-type profile. 51 111 IPR011016 GO:0008270
Mal1g0461 266 SMART ringv_2 58 105 IPR011016 GO:0008270
Mal1g0461 266 Pfam Protein of unknown function (DUF3675) 110 226 IPR022143 -
Mal1g0461 266 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 263 IPR033275 -
Mal1g0461 266 PANTHER OS01G0121200 PROTEIN 1 263 - -
Mal1g0461 266 CDD RING_CH-C4HC3_MARCH 59 105 - -
Mal1g0461 266 SUPERFAMILY RING/U-box 58 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0461 Mal-Chr1 5307147 5308974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0461 58 105 C3H Transcription Factor Family AT2G37950 45.098 1.97e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0461 - - vun:114190540 458.373