Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0459 ATGTCAAGCGGAAAGAAAGGCCGAGGTCGTCAAAAGATTGAGATAAAAAAGATGAGCAACAAAAGCAATTTGCAAGTTACTTTCTCAAAGCGCCGTAGCGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGCGGATGCTGCTCTCGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCTGAATCTTGATACGGTAATAGACCGCTATCCTTCTCTGGTCCCACCCCAAAACAACATGCCGCTTCACAACATCACCATGCAATTCATTGAGGATCACCGCAGCGCCAACGTGCGTGAACTCAATGTTCAGCTGACTCAAATCAACAACACGTTGGACGTCGAGAAGAAGCTTGGCAATGAGCTGAACCATTTGCGCAAGGCAGCCGAGGCTCAGTTTTGGTGGGCTTGTCCGATTGATGGAATGAGTAGGGATCAACTTGAATTATTCAAGAAGGCTTTGGAGGAGCTTAAGAAAATTGTAATTCAGGATGCTGCTACTCGAACTCTTCCATTTTTTGTTGACAACGCTTCATCCTCTAACATTTATCTTCATCATCAGCCAAATCCTCAACAAGCTGAAATGTTTCCACCACAATTTGTTCAAAACCCTATGTTGCAATTGCAGCCTCATTTGTTTGATGGATCTATGATGTGTCACCATGGCTTCAAATAA 693 0.443 MSSGKKGRGRQKIEIKKMSNKSNLQVTFSKRRSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHLNLDTVIDRYPSLVPPQNNMPLHNITMQFIEDHRSANVRELNVQLTQINNTLDVEKKLGNELNHLRKAAEAQFWWACPIDGMSRDQLELFKKALEELKKIVIQDAATRTLPFFVDNASSSNIYLHHQPNPQQAEMFPPQFVQNPMLQLQPHLFDGSMMCHHGFK* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0459 230 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mal1g0459 230 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal1g0459 230 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mal1g0459 230 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal1g0459 230 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 170 - -
Mal1g0459 230 Gene3D - 91 170 - -
Mal1g0459 230 PANTHER MADS BOX PROTEIN 7 170 - -
Mal1g0459 230 SUPERFAMILY SRF-like 9 96 IPR036879 GO:0003677|GO:0046983
Mal1g0459 230 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mal1g0459 230 CDD MADS_MEF2_like 9 76 IPR033896 GO:0000977|GO:0045944
Mal1g0459 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mal1g0459 230 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0459 Mal-Chr1 5288245 5291450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0459 5 187 Type I MADS-box Gene Family AT5G60440 52.880 2.02e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g0459 SRF-TF 5.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0459 - - gmx:100780445 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0459 1 5288245 5291450 Mal1g0459 1 5288245 5291450 ECH