Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0456 ATGTCGAGCGGAAAGAAAGGCCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGGAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTAGTCCCACCCCAAAACAACAGCACCATGCAATTCATTGAGGCTCACCGCAGCGCCAATGTGCGTGAACTCAATGCTGAGCTGACTCAAATCAACAACAGGTTGGACGCCGAGAAGAAGCTTGGCGATGAGCTGAACCGTTTGCGCAAGGCAACCGAGGCTCAATTTTGGTGGGCGTGTCCGCTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAGAAAGCTTTGGAGGAGCTAAAGAAACTTGTAATTCAGGATGCTGCTACTCGAACTCTTCCATTTTTTGTTGGCAACGCTTCATCCTCTAACATATATCTCCATCATCAGCCAAATCCTCAACAAGCTGAAATGTTTCCACCACAATTTTTTCAAAACCCTATGTTGCAAATGCAGCCTCCTTTGTTTGATGGATCGATGATGCGTCACCATGGCTTCAAATAA 678 0.4631 MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLVPPQNNSTMQFIEAHRSANVRELNAELTQINNRLDAEKKLGDELNRLRKATEAQFWWACPLDGMNRDQLELFKKALEELKKLVIQDAATRTLPFFVGNASSSNIYLHHQPNPQQAEMFPPQFFQNPMLQMQPPLFDGSMMRHHGFK* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0456 225 Gene3D - 89 165 - -
Mal1g0456 225 PANTHER MADS BOX PROTEIN 7 165 - -
Mal1g0456 225 MobiDBLite consensus disorder prediction 1 20 - -
Mal1g0456 225 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mal1g0456 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mal1g0456 225 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal1g0456 225 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mal1g0456 225 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal1g0456 225 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mal1g0456 225 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Mal1g0456 225 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 165 - -
Mal1g0456 225 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
Mal1g0456 225 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mal1g0456 225 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0456 Mal-Chr1 5258292 5258969 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0456 5 181 Type I MADS-box Gene Family AT5G60440 55.435 1.10e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g0456 SRF-TF 4.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0456 - - gmx:100780445 283.108