Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0421 ATGCATAACAAGGAAGTTTGTTCTCCGTCATCAAAAGGTGGTTACGGCATCGGCGTCAACACCGCCGGTCACATGCAGTCAAACGCCGGTGCGTTTGCTTCGTTGTACTCTGCTCTGACTAATGATCTTCCATCATCGCTCGCCGGAAACTGCAGTAACGCCGGCGGAGTTTCGCTTTATCCCTACTCAGACCTTGGAACAGAGTACGACTCGTGCGTGATACAGAAGCATCAGGATATGGTGAATCGTCACAGTATGTGTCTCAGTCGTCTCGTGGAGACTTCGAAAGAGGTTGAAGCTCTGCAACAGGAGAACGGACAGCTTCGTGCCGTGAACAAAGAGTTGCAGAAGAATCTGAACCTTCTCGTTCAGGCTTCGCTGGAGAATCGATTCGGCGGTGGCGGATCCTCCGTCCAGACTCAATCGACTCCGTTTGATGTGTTGCAAGGTTTCCGTGGCTTGAATCTTGGAGATGGAAAGGAAAACTGTGCTGATTGGAGTAGCAATAACATCAATAATAATAACAAGGAGATGCATGAAGCTTCCGATGAAAGTCCGACGAGTGTGATTGAGAATAACGGTGTTGAAACGGAGAGGTTCTCGCTGCCAAAGAGCATTTCTGTTAGATCTAATGGCTACTTGAAGTTGGCTCCGCCTCCGGCCGTCGTAACTAACAACAATGCTTGCCGCACCAAAGGCGCTACTCGCTCCCGCGCTTCCTCCACTCAATCTGATACAGTTCAAAAGGTATTTGTGCGAGGAGGGCAGAAAGAGGAAGAGCCTCTTGAGATGGTTGTGTACAACCAGGGGATGTTCAAGACTGAGCTGTGTAACAAATGGCAGGAAACTGGCACATGCCCTTATGGAGACCACTGTCAATTCGCTCACGGCATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTGTGCCCGTATGGCCATAGATGCCATTTCCGTCATGCACTTACTGAACAAGAGAAAGCTATGTCACAACCTAAGCCCAGATCAATGAAGCTGGAAAGATGA 1068 0.5009 MHNKEVCSPSSKGGYGIGVNTAGHMQSNAGAFASLYSALTNDLPSSLAGNCSNAGGVSLYPYSDLGTEYDSCVIQKHQDMVNRHSMCLSRLVETSKEVEALQQENGQLRAVNKELQKNLNLLVQASLENRFGGGGSSVQTQSTPFDVLQGFRGLNLGDGKENCADWSSNNINNNNKEMHEASDESPTSVIENNGVETERFSLPKSISVRSNGYLKLAPPPAVVTNNNACRTKGATRSRASSTQSDTVQKVFVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAMSQPKPRSMKLER* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0421 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 297 IPR000571 GO:0046872
Mal1g0421 355 SUPERFAMILY CCCH zinc finger 305 339 IPR036855 GO:0046872
Mal1g0421 355 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Mal1g0421 355 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 68 348 - -
Mal1g0421 355 SMART c3hfinal6 271 298 IPR000571 GO:0046872
Mal1g0421 355 SMART c3hfinal6 309 336 IPR000571 GO:0046872
Mal1g0421 355 ProSiteProfiles Zinc finger C3H1-type profile. 271 299 IPR000571 GO:0046872
Mal1g0421 355 PANTHER CCCH ZINC FINGER/TIS11-RELATED 68 348 IPR045877 GO:0003729
Mal1g0421 355 Coils Coil 91 118 - -
Mal1g0421 355 Gene3D - 305 341 - -
Mal1g0421 355 Gene3D - 266 304 - -
Mal1g0421 355 SUPERFAMILY CCCH zinc finger 268 303 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0421 Mal-Chr1 4833807 4836777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0421 62 350 C3H Transcription Factor Family AT1G68200 50.853 1.57e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal1g0421 zf-CCCH 2.9e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0421 K18753 - gmx:100796550 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0421 1 4833807 4836777 Mal1g0421 1 4833807 4836777 ECH