Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0409 ATGAAGATATCCCAAAATCGCGATGATGCATTGGCAGCTTTTCAGAAGGCAGTACAAGCTGCGTTTCAAGATAGGAAGGGAAATTATTATAATGAGGTTTTAAAAGTCCTAAAAGATCAAAGAATTTATACAAGAGGTGTTGCGTCAAGAGTGAAGGAGCTGCTTAAAGGGCATTCAGATTTGATTTTGAGATTCAACACCTTCCTCCCAAAGGAACATCAAATCAAACTTCCATTTCAACCTGAGACCACTGGGAGAAAGGTGCATAAGGTAGAAGAGAACCGTGAACTTCCCTGGGATGTGCTTGATATCATTTCCCAAGCACTAGATTTTGACGACCTTTTTCAGTTTGCCGGTGTGTGCAAGAATTGGAGGGCTTTTCATAAAATTCACCGGAGAAATTTCTTGGCATCCCAAGAACCATTAATTCTTCAAGTTTCTTATGATGATTTTGGTCGATCACTTTCCTTTATCAGCATACCCGACCAAAAAGTTTATTATCGCTTGAACATAGATGAGTGCTACGGGAAATATACCTACGCTACGTCTTCTAGCGGATATTTTATCTCGGTGGGAGGAAATAATTCAGTTTTGCTACTCAATCCATTTACAAGAATAAAGAAGGTAATCAATACATGTCCCTCTGAAGTTAAGTCTTGTTTTGATTTAAACCGTGCCGTGCTTGCTTTTGGCAAATGCTCTGAAGAATTTGTCTTGATGGTTGTTTTCAATTTTCCTGAGAGTTTGCATGTCTATCAATCTCGAAATCGTGGTTGGGTTACTTATTCGACTACAGGAAATCAAGGAAGGATTGTTGACGTTGTGGTTGTGCATAATATAATATATGTTGTCACTACCAAGGCCAATATAGGGGTACTTAGCTTGAATTCTGCAAAAATTAAATTTCTAACACTAAAGAATGCTCCCAATGAAATATTTCCCTTAACTCTTAGGTTGGTTAATTGTGATGAGCAACTTGTAGTGCTTTATTTTAGGTCCAATGAAATAAGGGATGTGTACAAGATAGACTTCTCAACCATGAGTTATGTCAAATTGGAAATTTTGGGCGACATTGCATTATTTCATGCTGTGTACAGAAATTCTTATGCATTGAGCAACCCGAATAAGTGGGGATATGAGAGCAACTCTGTGTATGCATTGAACAATATTAAATGTGCAGAATGTAGTGTGTATTCCGGGGATGATAAAAAATTGAAAAAATGCATTGTGCTTCCAGCTCATGGAGCATATTCCTACATGTTTGATTGGTGTTTTAGACATATACAATATGAGGTAGATTATTCTCTAGTCGGATGA 1317 0.3759 MKISQNRDDALAAFQKAVQAAFQDRKGNYYNEVLKVLKDQRIYTRGVASRVKELLKGHSDLILRFNTFLPKEHQIKLPFQPETTGRKVHKVEENRELPWDVLDIISQALDFDDLFQFAGVCKNWRAFHKIHRRNFLASQEPLILQVSYDDFGRSLSFISIPDQKVYYRLNIDECYGKYTYATSSSGYFISVGGNNSVLLLNPFTRIKKVINTCPSEVKSCFDLNRAVLAFGKCSEEFVLMVVFNFPESLHVYQSRNRGWVTYSTTGNQGRIVDVVVVHNIIYVVTTKANIGVLSLNSAKIKFLTLKNAPNEIFPLTLRLVNCDEQLVVLYFRSNEIRDVYKIDFSTMSYVKLEILGDIALFHAVYRNSYALSNPNKWGYESNSVYALNNIKCAECSVYSGDDKKLKKCIVLPAHGAYSYMFDWCFRHIQYEVDYSLVG* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0409 438 Gene3D Paired amphipathic helix 9 70 IPR036600 GO:0006355
Mal1g0409 438 SUPERFAMILY F-box domain 96 127 IPR036047 GO:0005515
Mal1g0409 438 PANTHER OS06G0113600 PROTEIN 87 433 - -
Mal1g0409 438 PANTHER OS06G0113600 PROTEIN 87 433 - -
Mal1g0409 438 Pfam F-box domain 96 126 IPR001810 GO:0005515
Mal1g0409 438 SUPERFAMILY Galactose oxidase, central domain 178 376 IPR011043 -
Mal1g0409 438 Pfam Paired amphipathic helix repeat 30 69 IPR003822 GO:0006355
Mal1g0409 438 ProSiteProfiles PAH domain profile. 1 72 IPR003822 GO:0006355
Mal1g0409 438 SUPERFAMILY PAH2 domain 12 71 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0409 Mal-Chr1 4687053 4688854 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0409 9 77 WRKY Transcription Factor Family AT4G12020 48.571 2.02e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal1g0409 PAH 8.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0409 - K11644 cam:101488742 461.07