Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0403 ATGAAGATATCCCAAAATCGCGATGATGCATTGGCAGCTTTTCAGAAGGCAGTACAAGCTGCGTTTCAAGATAGGAAGGGAAATTATTATAATGAGGTTTTAAAAGTCCTAAAAGATCAAAGAATTTATACAAGAGGTGTTGCGTCAAGAGTGAAGGAGCTGCTTAAAGGGCATTCAGATTTGATTTTGAGATTCAACACCTTCCTCCCAAAGGAACATCAAATCAAACTTCCATTTCAACCTGAGACCACTGGGAGAAAGGTGCAGAAGGTAGAAGAGAACCGTGAACTTCCCTGGGATGTGCTTGATATCATTTCCCAAGCACTAGATTTTGACGACCTTTTTCAGTTTGCCGGTGTGTGCAAGAATTGGAGGGCTTTTCATAAAATTCACCGGAGAAATTTCTTGGCATCCCAAGAACCATTAATTCTTCAAGTTTCTTATGATGATTTTGGTCGATCACTTTCCTTTATCAGCATACCCGACCAAAAAGTTTATTATCGCTTGAACATAGATGAGTGCTACGGGAAATATACCTACGCTACGTCTTCTAGCGGATATTTTATCTCGGTGGGAGGAAATAATTCAGTTTTGCTACTCAATCCATTTACAAGAATAAAGAAGGTAATCAATACATGTCCCTCTGAAGTTAAGTCTTGTTTTGATTTAAACCGTGCCGTGCTTGCTTTTGGCAAATGCTCTGAAGAATTTGTCTTGATGGTTGTTTTCAATTTTCCTGAGAGTTTGCATGTCTATCAATCTCGAAATCGTGGTTGGGTTACTTATTCGACTACAGGAAATCAAGGAAGGATTGTTGACGTTGTGGTTGTGCATAATATAATATATGTTGTCACTACCAAGGCCAACATAGGGGTCCAATGA 882 0.3923 MKISQNRDDALAAFQKAVQAAFQDRKGNYYNEVLKVLKDQRIYTRGVASRVKELLKGHSDLILRFNTFLPKEHQIKLPFQPETTGRKVQKVEENRELPWDVLDIISQALDFDDLFQFAGVCKNWRAFHKIHRRNFLASQEPLILQVSYDDFGRSLSFISIPDQKVYYRLNIDECYGKYTYATSSSGYFISVGGNNSVLLLNPFTRIKKVINTCPSEVKSCFDLNRAVLAFGKCSEEFVLMVVFNFPESLHVYQSRNRGWVTYSTTGNQGRIVDVVVVHNIIYVVTTKANIGVQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0403 293 PANTHER OS06G0113600 PROTEIN 87 293 - -
Mal1g0403 293 Pfam F-box domain 96 126 IPR001810 GO:0005515
Mal1g0403 293 PANTHER OS06G0113600 PROTEIN 87 293 - -
Mal1g0403 293 SUPERFAMILY PAH2 domain 12 71 IPR036600 GO:0006355
Mal1g0403 293 Gene3D Paired amphipathic helix 9 70 IPR036600 GO:0006355
Mal1g0403 293 ProSiteProfiles PAH domain profile. 1 72 IPR003822 GO:0006355
Mal1g0403 293 Pfam Paired amphipathic helix repeat 30 69 IPR003822 GO:0006355
Mal1g0403 293 SUPERFAMILY F-box domain 96 127 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0403 Mal-Chr1 4624529 4626015 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0403 9 77 WRKY Transcription Factor Family AT4G12020 48.571 3.72e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal1g0403 PAH 4.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0403 K11644 - cam:101488742 295.819