Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g0400 | ATGGCTTCAAGGTCATATTCCAACTTGTTAGATCTTACTTCATGTGGCTCGCCGTCTTTCGGTCGCGAGAAGAAAAGGCTTCCTAGAGTTGCAACTGTTGCTGGAGTATTGTCTGAATTAGATGATGAAACCAACAACAGTGTTGGTTCTGATGCTCCTTCCTCCATCTCTCAAGAGAGGATGATCATTGTTGGTAACCAGCTTCCATTGAAGGCACTAAGGAAAGAGGAGAATGGTAAGTGGGAATTCACTTGGGATGAGGACTCACTTCTTTTACAGCTCAAAGATGGTCTTGGTGATGATGTTGAAACAATCTATATTGGTTGTCTAAAAGAAGAAATCGATCCAATTGAGCAAGATGATGTAGCTCAATACTTGCTTGACAATTTCAAATGTGTACCAACTTTTCTGCCTCCTGAACTTTTCACTAAATTCTATCATGGTTTCTGCAAACAACACCTATGGCCTTTGTTTCACTACATGCTTCCGCTTTCGCCTGATCTTGGCGGTCGATTTGATCGATCCCTTTGGCAGGCTTATGTGTCTGTCAACAAAATATTTGCTGATAAAGTGATGGAAGTCATTAACCCTGATGAGGACTTTGTTTGGGTTCATGACTACCACTTGATGGTTCTTCCAACATTTTTGAGAAAGAGATTTAATAGGGCAAGGCTTGGATTCTTCCTCCACAGTCCTTTTCCTTCGTCGGAGATATACCGAACCCTTCCTGTTAGAGACGAACTTCTTAGAGCTCTTTTGAATTCTGACCTTATAGGGTTTCATACTTTTGACTACGCTAGGCATTTCCTCTCCTGTTGCAGTAGAATGCTAGGGATTGCTTATCAATCCAAGCGAGGCTACATCGGTCTTGAGTACTATGGAAGAACTGTTAGCATTAAGATTCTTCCTGTTGGTATTCATATAGGTCAGCTTGAATCAGTCATGAATCTTTCTGAGACAGAAAGCAAGGTTGCAGAGTTAAGAAACCGGTTCAAAGGTCAAACTGTGATGCTTGGGGTGGATGACATGGATATCTTCAAAGGAATCAGCTTAAAACTTTTGGCGATGGAGCAATTGCTTTTACAACATGCTGATAAGAGGGGGAAAGTTGTTCTGGTTCAAATCGCAAACCCGGCTAGAGGCCGCGGAAAGGATGTGCAGGAAGTGCAGTGTGAAACTTATGCAACTGTGAAAAGGATAAACGCCACTTTTGGAAGGCCTGGATACACCCCTGTAATCTTGATTGATACAACACTTCAGAGTTACGAGCGAATTGCTTATTATGCAATTTCAGAATGCTGTCTTGTTACAGCAGTGAGAGATGGGATGAACCTTATACCTTATGAGTATGTCATTTGTAGACAAGGAAATGCGAAGATAGATGAGATTTTAGGAATAAACTCAACTATCCAAAAGAAGAGCATGCTGGTGGTGTCTGAGTTCATTGGCTGCTCCCCATCATTAAGTGGTGCAATTCGGGTGAATCCATGGAATATTGATGCTGTTGCTGAAGCTATGGATTCTGCCTTAATGGTCCCGGAGTCTGAAAAACAAATGAGGCATGAGAAGCATTATAGGTACGTTAGTACACATGATGTTGCGTATTGGGCGCGTAGCTTCTTGCAGGATCTGGAAAGGGCTTGTAGGGATCATCTGAGGAGGAGATGCTGGGGAATCGGTTTTGGTTTAGGATTTCGAGTGATCGCTTTGGATCCAAGCTTTAGAAAACTATCTGTGGAACATATTGTTTCGGCTTACAAGAGGACTAAGCACCGAGCAATTCTTTTGGATTATGATAGTACTATGGTGCAGCCTGGATCAATTAGTACAACACCTAGTGCTGAAGCTATTTCCATCTTGAACAGCTTGTGCAGTGATACCAAGAACTGTGTTTTCATTGTGAGTGGAAAGGAGAGAAAGACTCTTACTGAATGGTTTTCTTCTTGTGAAAAGCTTGGACTTGCTGCAGAACATGGCTATTTTGTGAAGACAAGTCATACTGAAGAATGGGAACCTTGTATTTCTGTGCCTGATTTTGACTGGAAACAGATTGCTGAGCCAGTTATGCAGTTATATACAGAAACTACTGATGGTTCTAACATAGAGTCCAAAGAGAGTGCTCTTGTTTGGAATTACGAATTTGCAGACCGAGATTTCGGTTCATGTCAAGCTAAGGAGCTTCTTGATCATCTGGAAAGTGTTCTTGCTAATGAGCCTGTTTCAGTTAAAAGTGGACCAAACATCGTGGAAGTTAAACCTCAGGGTGTGAGTAAGGGTATTGTAGCAGAACGTATTCTGATAACAATGCAACAAAAGGGAGTGATTCCAGATTTTGTTCTATGCATTGGTGATGACAGGTCAGATGAGGACATGTTTGGGGTAATAACAAGTGCAAGGGCATCGCTATCGCCTATTGCGGATGTGTTTCCTTGCACTGTTGGTCAGAAACCAAGCAAGGCCAAGTATTACTTGGAAGACACAAGTGAGATTTTGAGGATGTTGCAGGGTCTAGCTAATGCTTCTGAGCAAACTGCTGCTAGAAGTTCTTCCCAGTTATCTCCTCGTTAA | 2568 | 0.4213 | MASRSYSNLLDLTSCGSPSFGREKKRLPRVATVAGVLSELDDETNNSVGSDAPSSISQERMIIVGNQLPLKALRKEENGKWEFTWDEDSLLLQLKDGLGDDVETIYIGCLKEEIDPIEQDDVAQYLLDNFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVINPDEDFVWVHDYHLMVLPTFLRKRFNRARLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGIAYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLESVMNLSETESKVAELRNRFKGQTVMLGVDDMDIFKGISLKLLAMEQLLLQHADKRGKVVLVQIANPARGRGKDVQEVQCETYATVKRINATFGRPGYTPVILIDTTLQSYERIAYYAISECCLVTAVRDGMNLIPYEYVICRQGNAKIDEILGINSTIQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALMVPESEKQMRHEKHYRYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPSFRKLSVEHIVSAYKRTKHRAILLDYDSTMVQPGSISTTPSAEAISILNSLCSDTKNCVFIVSGKERKTLTEWFSSCEKLGLAAEHGYFVKTSHTEEWEPCISVPDFDWKQIAEPVMQLYTETTDGSNIESKESALVWNYEFADRDFGSCQAKELLDHLESVLANEPVSVKSGPNIVEVKPQGVSKGIVAERILITMQQKGVIPDFVLCIGDDRSDEDMFGVITSARASLSPIADVFPCTVGQKPSKAKYYLEDTSEILRMLQGLANASEQTAARSSSQLSPR* | 856 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g0400 | 855 | CDD | GT20_TPS | 60 | 545 | IPR001830 | GO:0003824|GO:0005992 | |
| Mal1g0400 | 855 | Gene3D | Glycogen Phosphorylase B; | 53 | 313 | - | - | |
| Mal1g0400 | 855 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 1 | 845 | IPR001830 | GO:0003824|GO:0005992 | |
| Mal1g0400 | 855 | TIGRFAM | T6PP: trehalose-phosphatase | 590 | 838 | IPR003337 | GO:0003824|GO:0005992 | |
| Mal1g0400 | 855 | TIGRFAM | HAD-SF-IIB: HAD hydrolase, family IIB | 594 | 794 | IPR006379 | - | |
| Mal1g0400 | 855 | CDD | HAD_TPP | 593 | 829 | - | - | |
| Mal1g0400 | 855 | Gene3D | Glycogen Phosphorylase B; | 314 | 529 | - | - | |
| Mal1g0400 | 855 | Pfam | Trehalose-phosphatase | 595 | 828 | IPR003337 | GO:0003824|GO:0005992 | |
| Mal1g0400 | 855 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 60 | 549 | - | - | |
| Mal1g0400 | 855 | Gene3D | - | 717 | 852 | IPR023214 | - | |
| Mal1g0400 | 855 | Gene3D | - | 591 | 701 | IPR023214 | - | |
| Mal1g0400 | 855 | SUPERFAMILY | HAD-like | 592 | 838 | IPR036412 | - | |
| Mal1g0400 | 855 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 | 1 | 845 | - | - | |
| Mal1g0400 | 855 | Pfam | Glycosyltransferase family 20 | 60 | 545 | IPR001830 | GO:0003824|GO:0005992 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g0400 | Mal-Chr1 | 4583220 | 4586489 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal1g0400 | 1 | 850 | Trehalose Biosynthesis Gene Families | AT4G17770 | 77.491 | 0.0 | 1412 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal1g0400 | K16055 | - | gmx:100782799 | 1548.49 |